Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20557
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 121 7e-28
10_08_0870 - 21178136-21178534 30 1.6
09_02_0327 - 7284829-7284889,7284946-7286126 30 1.6
09_02_0121 + 4502628-4502696,4503727-4503829,4504205-4504328,450... 29 3.7
05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054... 29 4.8
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011... 28 6.4
01_06_0639 + 30772804-30772904,30773386-30775675 28 6.4
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496 28 8.5
08_02_0186 + 13965960-13966424 28 8.5
07_01_0546 - 4024282-4024291,4024486-4024550,4024739-4024904,402... 28 8.5
05_05_0070 + 22148595-22148907,22148988-22149104,22149196-221493... 28 8.5
04_04_0716 + 27513201-27513854 28 8.5
04_01_0259 + 3422055-3422462,3499540-3499671 28 8.5
01_01_0816 + 6360526-6360802,6360902-6361117,6361231-6361379,636... 28 8.5
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 121 bits (291), Expect = 7e-28
Identities = 51/86 (59%), Positives = 67/86 (77%)
Frame = +2
Query: 248 LVRSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDE 427
++ S DHAS+RRG++VY QVC +CHS+ I++R+LV V +TE+E KA AAE+ + DGP++
Sbjct: 463 ILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPND 522
Query: 428 EGNYFERPGKLSDYLPSPYPNENAAR 505
EG F RPGKLSD P PYPNE AAR
Sbjct: 523 EGEMFTRPGKLSDRFPQPYPNEQAAR 548
Score = 106 bits (254), Expect = 2e-23
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = +1
Query: 484 PQ*KCGSCSNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPG 663
P + +N GAYPPDLSLI R G++Y+FALLTGY +PPAGV +REG +YNPYFPG
Sbjct: 542 PNEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPG 601
Query: 664 GAISMAQVLFDEAAEY 711
GAI+M ++L D A EY
Sbjct: 602 GAIAMPKMLIDGAVEY 617
>10_08_0870 - 21178136-21178534
Length = 132
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 199 ACTDCSSAKSRAPTPPPTTP 140
AC DC S K AP P P TP
Sbjct: 21 ACPDCPSPKPPAPRPKPPTP 40
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 184 SSAKSRAPTPPPTTPKVDSHTFLFFV 107
+S SR P PPP P + H FLF +
Sbjct: 138 ASGDSRNPPPPPRRPAIVLHAFLFLL 163
>09_02_0121 +
4502628-4502696,4503727-4503829,4504205-4504328,
4505963-4506306,4506383-4506487,4507907-4508288,
4509173-4509437,4509936-4510094,4511150-4511201,
4511266-4511462,4512865-4513350,4513797-4514093
Length = 860
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -1
Query: 207 SPMPAQTAQVQKVELQHLHLPLPKWTATLFCFLSILECWWT 85
S MP QT Q+ LQ L+LP FLS+ W+
Sbjct: 506 SVMPTQTGHAQEARLQQLNLPHAMEILIAVSFLSLFLVIWS 546
>05_03_0525 + 15002846-15003048,15004814-15004937,15005458-15005481,
15005995-15006779,15006839-15006873,15007108-15007601,
15007951-15008452,15008725-15008867,15009523-15009576,
15010255-15010362,15010529-15010705,15011169-15011186,
15011561-15011938,15012125-15012310,15012356-15013205,
15013362-15013402,15013491-15013868,15014195-15014236,
15014528-15014678,15015621-15015670
Length = 1580
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Frame = +2
Query: 335 IAFRNLVNVTHTEDEAKAEAAEVMIKDGPDEEGNYFER-----PGKLSDYLPSP-YPNEN 496
+ R VN+ +DE E EV +++ P G+ R G L Y P P
Sbjct: 943 LRLRQQVNINGNDDEEMEEVGEVEVQEAPSAAGSTLVRKKPRNKGPLDSYCMRPEEPRAK 1002
Query: 497 AARAQTMVLTH 529
QT + H
Sbjct: 1003 GKHIQTTMSKH 1013
>04_03_0055 +
10299539-10299703,10300042-10300746,10301025-10301116,
10302896-10303313
Length = 459
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 314 PCRLVCKLHNPDGH*RGPGSEPATVIPR 231
P RL+C LH P P +P+T +PR
Sbjct: 332 PLRLLCTLHGPRLSSPKPSHQPSTHLPR 359
>01_06_0639 + 30772804-30772904,30773386-30775675
Length = 796
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 431 GNYFERPGKLSDY-LPSPYPNENAARAQ 511
GNY RPG S+Y PS + E+AA Q
Sbjct: 293 GNYANRPGSTSEYPNPSRFNKEHAANFQ 320
>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
Length = 389
Score = 27.9 bits (59), Expect = 8.5
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 4/107 (3%)
Frame = -2
Query: 329 AKSGMPCRLVCKLHN-PDGH*RGPGSEPATVIPRVVRWVSFRARCLHRLLKCKK*SSNTS 153
A G CR C P+ G + P+T P V F++ C TS
Sbjct: 191 AGGGAACRSACDAFGRPEFCCSGAFANPSTCRPTAYSQV-FKSACPRSYSYAF--DDPTS 247
Query: 152 TYHSQSGQPHFSVFCPSLSVGG--QLTSLRPN*TIFFQKT-CPTNPT 21
T+ G + FCP+ S G + T+ P T PT PT
Sbjct: 248 TFTCSGGPDYTLTFCPASSPSGSQKSTTATPTPAAMMPGTGTPTTPT 294
>08_02_0186 + 13965960-13966424
Length = 154
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/81 (29%), Positives = 29/81 (35%)
Frame = +1
Query: 469 PAVSIPQ*KCGSCSNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYN 648
P+ P G S+ PP + C G GG Y Y PPAG Y
Sbjct: 68 PSPPPPSQPAGPSSHTPPCPPAAVVCCGGGGGGGQYT-PQQPYYYAPPAG--------YV 118
Query: 649 PYFPGGAISMAQVLFDEAAEY 711
PY+ A S +L A Y
Sbjct: 119 PYYNNSAASPPVLLAHAAVGY 139
>07_01_0546 -
4024282-4024291,4024486-4024550,4024739-4024904,
4025012-4025160,4025332-4025440,4025532-4025725,
4025839-4025974,4026123-4026623,4026709-4026813,
4027023-4027113,4027325-4027411,4028038-4028128,
4028307-4028336
Length = 577
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = -3
Query: 577 CNLRRPYVPSRSETSPVGKHHCLSTSR----IFIGVWRRQVVRKFTRPFKV 437
CN P ++ P G +CL S+ IF+ VW R +R R KV
Sbjct: 285 CNTTAP--TEANDEQPNGSRYCLVASKQMVGIFLTVWVRNEIRDDVRNLKV 333
>05_05_0070 +
22148595-22148907,22148988-22149104,22149196-22149350,
22149987-22150061,22150179-22150469,22150942-22151292,
22151390-22151794
Length = 568
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 178 AKSRAPTPPPTTPKVDS 128
AK + P PPP++P+VD+
Sbjct: 78 AKEKKPPPPPSSPRVDA 94
>04_04_0716 + 27513201-27513854
Length = 217
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 214 ASEPDACTDCSSAKSRAPTPPPTTPKVDSHTFLFFVHP*VLVD 86
A PD C+ S+A +P PPP + D + LF + P +L+D
Sbjct: 142 AKSPDTCSVASAA---SPQPPPPDAEADPDSTLFDL-PDLLLD 180
>04_01_0259 + 3422055-3422462,3499540-3499671
Length = 179
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +2
Query: 368 TEDEAKAEAAEVMIKDGPDEE-GNYFERPGKLSDYLPSPYPN 490
TE+ + A +M +DG DE+ GN GK +P P P+
Sbjct: 64 TEEIQTPDRAAIMFRDGFDEDYGNTLNYFGKKKPLVPLPPPD 105
>01_01_0816 +
6360526-6360802,6360902-6361117,6361231-6361379,
6361474-6361750,6362228-6362457
Length = 382
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 538 SLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEY 711
SL G GG DY+F L AG + E +Y P G + + + +E A Y
Sbjct: 173 SLFFMGEFGGNDYVFLL-------AAGKTVDEAMSYVPKVVGVISAGVEAVIEEGARY 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,096,812
Number of Sequences: 37544
Number of extensions: 532283
Number of successful extensions: 2006
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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