Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20557
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15)         122   3e-28
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)           66   3e-11
SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)                 30   1.6  
SB_50798| Best HMM Match : CBS (HMM E-Value=2.8)                       30   1.6  
SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)                      30   1.6  
SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)                 30   1.6  
SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)                  30   1.6  
SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)                   30   1.6  
SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)                   30   1.6  
SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)                   30   1.6  
SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)                   30   1.6  
SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)                     30   1.6  
SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)                   29   3.7  
SB_23782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)                       28   6.5  
SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.5  
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)     28   8.6  
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)             28   8.6  

>SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15)
          Length = 134

 Score =  122 bits (294), Expect = 3e-28
 Identities = 55/97 (56%), Positives = 69/97 (71%)
 Frame = +2

Query: 218 PTSQPLESQWLVRSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAA 397
           P   P     +  S+DH S+RRG++VY+QVC ACHS+  +AFR+LV V +TEDE KA AA
Sbjct: 34  PPKLPWSHNGVFNSIDHDSIRRGFQVYRQVCAACHSMNRLAFRHLVGVCYTEDEMKAIAA 93

Query: 398 EVMIKDGPDEEGNYFERPGKLSDYLPSPYPNENAARA 508
           E  + DGP+++G  F RPGKLSD LP PY NE AARA
Sbjct: 94  EYDVVDGPNDQGEMFTRPGKLSDPLPEPYANEEAARA 130



 Score = 32.3 bits (70), Expect = 0.40
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 174 FALEQSVQASGSEAHPPHNPWNHSGWF 254
           + L+  V A   E HPP  PW+H+G F
Sbjct: 19  YLLQPDVHAEELELHPPKLPWSHNGVF 45


>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
          Length = 127

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 28/47 (59%), Positives = 35/47 (74%)
 Frame = +1

Query: 571 DYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEY 711
           DY+F LLTGY +PPAGV +R+   +N YFPG AI MAQ L++E  EY
Sbjct: 1   DYVFHLLTGYADPPAGVEIRDDLYFNAYFPGQAIGMAQALYNEIIEY 47


>SB_59443| Best HMM Match : RVT_1 (HMM E-Value=3.8e-07)
          Length = 942

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 616 DGCTDCNRNAPSQAATPPLPTSP 638


>SB_50798| Best HMM Match : CBS (HMM E-Value=2.8)
          Length = 234

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTSP 195


>SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)
          Length = 310

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +2

Query: 344 RNLVNVTHTEDEAKAEAA----EVMIKDGPDEEGNYFERPGKLSD 466
           +N++N   ++ EA A+ +    E++ K+GP  +G Y+  PG  S+
Sbjct: 39  KNMMNANESDIEADADFSLFNREILDKEGPGPDGEYYIDPGSGSN 83


>SB_49727| Best HMM Match : RVT_1 (HMM E-Value=4.5e-07)
          Length = 1286

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202  DACTDCS-SAKSRAPTPP-PTTP 140
            D CTDC+ +A S+A TPP PT+P
Sbjct: 1157 DGCTDCNRNAPSQAATPPLPTSP 1179


>SB_46740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 73  DGCTDCNRNAPSQAATPPLPTSP 95


>SB_39727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 124 DGCTDCNRNAPSQAATPPLPTSP 146


>SB_35108| Best HMM Match : AT_hook (HMM E-Value=0.15)
          Length = 1600

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 635 DGCTDCNRNAPSQAATPPLPTSP 657


>SB_20587| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 1485

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202  DACTDCS-SAKSRAPTPP-PTTP 140
            D CTDC+ +A S+A TPP PT+P
Sbjct: 1249 DGCTDCNRNAPSQAATPPLPTSP 1271


>SB_17624| Best HMM Match : rve (HMM E-Value=2.2e-11)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 790 DGCTDCNRNAPSQAATPPLPTSP 812


>SB_59576| Best HMM Match : rve (HMM E-Value=3.7e-14)
          Length = 707

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 450 DGCTDCNRNAPSQAATPPLPTSP 472


>SB_55917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1412

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 846 DGCTDCNRNAPSQAATPPLPTSP 868


>SB_53291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 275 DGCTDCNRNAPSQAATPPLPTSP 297


>SB_24375| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 638

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 453 DGCTDCNRNAPSQAATPPLPTSP 475


>SB_213| Best HMM Match : rve (HMM E-Value=2.2e-08)
          Length = 745

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT+P
Sbjct: 232 DGCTDCNRNAPSQAATPPLPTSP 254


>SB_50560| Best HMM Match : rve (HMM E-Value=7.2e-15)
          Length = 364

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -3

Query: 202 DACTDCS-SAKSRAPTPP-PTTP 140
           D CTDC+ +A S+A TPP PT P
Sbjct: 173 DGCTDCNRNAPSQAATPPLPTYP 195


>SB_23782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 649 DCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSE 539
           D +  P + L + E+PCN  +A+  N+++ + P  ++
Sbjct: 26  DSNQQPRINLQENEIPCN--IAQPVNIKKSFEPDSNQ 60


>SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)
          Length = 404

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 652 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 521
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+
Sbjct: 340 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 380


>SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 652 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 521
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+
Sbjct: 16  VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 56


>SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 652 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 521
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 152


>SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 652 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGK 521
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGR 152


>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
          Length = 2022

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 168  LLFALEQSVQASGSEAHPPHNPWNHSGWFA 257
            ++FALEQ  + +  +A  PH  W H  + A
Sbjct: 1138 IVFALEQLQKITNQQACTPHEQWFHRAYSA 1167


>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
          Length = 280

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 278 RRGYEVYKQVCKACHSLQYIAFRNL--VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFE 445
           +R Y  YK+  KAC   +Y  F+ L  + +   +DE  A+     +K+ P +  +Y +
Sbjct: 13  KRLYNNYKKSGKACDKEKYRKFQKLFKIKMKKAQDEYIADTLNSDLKEKPKKFWSYIK 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,444,522
Number of Sequences: 59808
Number of extensions: 560959
Number of successful extensions: 1811
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1808
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)