Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20557
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical pr... 107 8e-24
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 31 0.62
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 31 0.62
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical pr... 29 3.3
AC091267-1|AAK31565.1| 789|Caenorhabditis elegans Hypothetical ... 29 3.3
Z74032-5|CAA98467.1| 219|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z68749-7|CAA92962.2| 728|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68219-9|CAA92483.2| 728|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical pr... 28 7.6
AY851363-1|AAW34127.1| 728|Caenorhabditis elegans fibulin-1D sp... 28 7.6
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 28 7.6
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 28 7.6
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 28 7.6
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 28 7.6
AF070477-1|AAC24035.1| 589|Caenorhabditis elegans fibulin-1D pr... 28 7.6
AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1 iso... 28 7.6
AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1 iso... 28 7.6
AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1 iso... 28 7.6
AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1 iso... 28 7.6
AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical ... 28 7.6
AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C pr... 28 7.6
>Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical
protein C54G4.8 protein.
Length = 285
Score = 107 bits (257), Expect = 8e-24
Identities = 47/76 (61%), Positives = 57/76 (75%)
Frame = +1
Query: 484 PQ*KCGSCSNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPG 663
P K + +NNGA PPDLSL+ R GG+DY+F+LLTGY+E PAGV + +G+ YNPYFPG
Sbjct: 132 PNKKAAAAANNGAAPPDLSLMALARHGGDDYVFSLLTGYLEAPAGVKVDDGKAYNPYFPG 191
Query: 664 GAISMAQVLFDEAAEY 711
G ISM Q LFDE EY
Sbjct: 192 GIISMPQQLFDEGIEY 207
Score = 107 bits (256), Expect = 1e-23
Identities = 49/84 (58%), Positives = 65/84 (77%)
Frame = +2
Query: 257 SLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDEEGN 436
S D ASVRRGYEVYKQVC ACHS++++ +R+ V+ TE+EAKAEAA+ +I D D++G
Sbjct: 57 SFDIASVRRGYEVYKQVCAACHSMKFLHYRHFVDTIMTEEEAKAEAADALIND-VDDKGA 115
Query: 437 YFERPGKLSDYLPSPYPNENAARA 508
+RPG L+D LP+PYPN+ AA A
Sbjct: 116 SIQRPGMLTDKLPNPYPNKKAAAA 139
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/30 (56%), Positives = 20/30 (66%)
Frame = +3
Query: 168 LLFALEQSVQASGSEAHPPHNPWNHSGWFA 257
L++ALE SV ASG HP PW HSG F+
Sbjct: 27 LVYALENSVSASGDNVHPYALPWAHSGPFS 56
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 270 AWSRERTSHCDSKGCEVGELQSPMPAQTAQVQKVELQHLHL 148
AW +E + G E GE Q+P+ QT+ +VEL + L
Sbjct: 829 AWDQEVAEQQPNSGGETGENQNPLDVQTSFPYEVELAYTEL 869
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 31.5 bits (68), Expect = 0.62
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 270 AWSRERTSHCDSKGCEVGELQSPMPAQTAQVQKVELQHLHL 148
AW +E + G E GE Q+P+ QT+ +VEL + L
Sbjct: 829 AWDQEVAEQQPNSGGETGENQNPLDVQTSFPYEVELAYTEL 869
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 184 SSAKSRAPTPPPTTPKVDS 128
SS++SR+P PPP P+ DS
Sbjct: 508 SSSRSRSPPPPPRRPRQDS 526
>Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical
protein C44H4.6 protein.
Length = 367
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 180 LEQSVQASGSEAHPPHNPWNHSGWFAPWTTLVSVGVMKFTNKSARHATL 326
L ++A G+ + WN+ P+ T+ VG+ KF + +TL
Sbjct: 243 LALQIKAFGTPSKEDMAKWNYEYVHIPYDTITGVGIQKFIGRKLSLSTL 291
>AC091267-1|AAK31565.1| 789|Caenorhabditis elegans Hypothetical
protein Y37B11A.1 protein.
Length = 789
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 622 LHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLSTSRIFIGVWRRQVVRK 458
++ PCNQS+ +C + P +P R + S +S + WR + +RK
Sbjct: 675 MNDPNAPCNQSIPPKCPKKVPVLPVRQKRS-------VSAEEMASPEWRSKQIRK 722
>Z74032-5|CAA98467.1| 219|Caenorhabditis elegans Hypothetical
protein F35B12.6 protein.
Length = 219
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 205 PDACTDCSSAKSRAPTPPPTTPKVDSH 125
PD +D S+ +S +P PP P+ D H
Sbjct: 84 PDTISDDSADQSGSPNSPPFVPQGDGH 110
>Z68749-7|CAA92962.2| 728|Caenorhabditis elegans Hypothetical
protein F56H11.1c protein.
Length = 728
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 307 CDAKKCGDGELQNPMTGECTSI 328
>Z68749-6|CAC35818.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>Z68749-5|CAC35817.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>Z68219-9|CAA92483.2| 728|Caenorhabditis elegans Hypothetical
protein F56H11.1c protein.
Length = 728
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 307 CDAKKCGDGELQNPMTGECTSI 328
>Z68219-7|CAC35827.1| 689|Caenorhabditis elegans Hypothetical
protein F56H11.1b protein.
Length = 689
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>Z68219-6|CAC35826.1| 712|Caenorhabditis elegans Hypothetical
protein F56H11.1a protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>AY851363-1|AAW34127.1| 728|Caenorhabditis elegans fibulin-1D
splice variant protein.
Length = 728
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 307 CDAKKCGDGELQNPMTGECTSI 328
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 598 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 693
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 598 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 693
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 598 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 693
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 598 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 693
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AF070477-1|AAC24035.1| 589|Caenorhabditis elegans fibulin-1D
precursor protein.
Length = 589
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 168 CDAKKCGDGELQNPMTGECTSI 189
>AF051403-2|AAC28323.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>AF051403-1|AAC28324.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>AF051402-1|AAC28322.1| 712|Caenorhabditis elegans fibulin-1
isoform C precursor protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>AF051401-1|AAC28321.1| 689|Caenorhabditis elegans fibulin-1
isoform D precursor protein.
Length = 689
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
>AF000265-4|AAK68198.1| 457|Caenorhabditis elegans Hypothetical
protein C18E3.6 protein.
Length = 457
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -3
Query: 211 SEPDACTDCSSAKSRAPTPPPTTP 140
S+P A C+ APTPPP P
Sbjct: 204 SDPGATPMCNRKSGGAPTPPPPPP 227
>AB212860-1|BAD98165.1| 712|Caenorhabditis elegans fibulin-1C
protein.
Length = 712
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 243 CDSKGCEVGELQSPMPAQTAQV 178
CD+K C GELQ+PM + +
Sbjct: 268 CDAKKCGDGELQNPMTGECTSI 289
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,419,152
Number of Sequences: 27780
Number of extensions: 411999
Number of successful extensions: 1316
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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