Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20557
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1, ...   123   1e-28
At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1, ...   121   5e-28
At1g05650.1 68414.m00586 polygalacturonase, putative / pectinase...    30   1.3  
At3g01840.1 68416.m00125 protein kinase family protein contains ...    30   1.8  
At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein ...    29   4.0  
At2g32910.1 68415.m04035 expressed protein                             29   4.0  
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain...    29   4.0  
At1g18740.1 68414.m02337 expressed protein                             29   4.0  
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ...    28   5.3  
At3g17330.1 68416.m02215 expressed protein contains Pfam profile...    28   5.3  
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c...    28   5.3  
At5g57010.1 68418.m07115 calmodulin-binding family protein conta...    28   7.1  
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    28   7.1  
At2g31955.1 68415.m03903 molybdopterin biosynthesis protein, put...    28   7.1  
At4g23090.1 68417.m03328 hypothetical protein                          27   9.3  

>At5g40810.1 68418.m04955 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score =  123 bits (297), Expect = 1e-28
 Identities = 53/92 (57%), Positives = 72/92 (78%)
 Frame = +2

Query: 230 PLESQWLVRSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMI 409
           P   + ++ S DHAS+RRG++VY+QVC +CHS+  I++R+LV V +TE+EAKA AAE+ +
Sbjct: 77  PWPHEGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEV 136

Query: 410 KDGPDEEGNYFERPGKLSDYLPSPYPNENAAR 505
            DGP++EG  F RPGKLSD LP PY NE+AAR
Sbjct: 137 VDGPNDEGEMFTRPGKLSDRLPEPYSNESAAR 168



 Score =  106 bits (255), Expect = 1e-23
 Identities = 44/68 (64%), Positives = 56/68 (82%)
 Frame = +1

Query: 508 SNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQV 687
           +N GAYPPDLSL+   R  G++Y+FALLTGY +PPAG+ +REG +YNPYFPGGAI+M ++
Sbjct: 170 ANGGAYPPDLSLVTKARHNGQNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKM 229

Query: 688 LFDEAAEY 711
           L DEA EY
Sbjct: 230 LNDEAVEY 237


>At3g27240.1 68416.m03405 cytochrome c1, putative cytochrome c1,
           heme protein, mitochondrial precursor (Clone PC13III)
           [Solanum tuberosum] SWISS-PROT:P25076
          Length = 307

 Score =  121 bits (291), Expect = 5e-28
 Identities = 52/92 (56%), Positives = 70/92 (76%)
 Frame = +2

Query: 230 PLESQWLVRSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMI 409
           P     ++ S DHAS+RRG++VY+QVC +CHS+  I++R+LV V +TE+EAKA AAE+ +
Sbjct: 77  PWPHDGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEEAKAMAAEIEV 136

Query: 410 KDGPDEEGNYFERPGKLSDYLPSPYPNENAAR 505
            DGP++EG  F RPGKLSD  P PY NE+AAR
Sbjct: 137 VDGPNDEGEMFTRPGKLSDRFPQPYANESAAR 168



 Score =  105 bits (253), Expect = 2e-23
 Identities = 45/68 (66%), Positives = 55/68 (80%)
 Frame = +1

Query: 508 SNNGAYPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQV 687
           +N GAYPPDLSLI   R  G +Y+FALLTGY +PPAG+ +REG +YNPYFPGGAI+M ++
Sbjct: 170 ANGGAYPPDLSLITKARHNGPNYVFALLTGYRDPPAGISIREGLHYNPYFPGGAIAMPKM 229

Query: 688 LFDEAAEY 711
           L DEA EY
Sbjct: 230 LNDEAVEY 237


>At1g05650.1 68414.m00586 polygalacturonase, putative / pectinase,
           putative similar to polygalacturonase 5 [Lycopersicon
           esculentum] GI:2459817; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28 (polygalacturonases)
          Length = 394

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +1

Query: 1   QTWRPPSVGFVGHVF*KNMV*FGLRLVSCPPTLKDGQKTEKCGCPLWEW*VEVLELYFLH 180
           ++W  PS GFV +VF +N++   +R V  P  +         GCP     V++ ++ + +
Sbjct: 276 KSWARPSTGFVRNVFFQNLI---MRNVQNPIIIDQNYCPSNQGCPTEHSGVKITQVTYKN 332

Query: 181 L-SSLCRHRALKL 216
           +  +     A+KL
Sbjct: 333 IQGTSATQEAMKL 345


>At3g01840.1 68416.m00125 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 654

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 6   MAATVGRICGARLLKKYG-LVWPQACQLSTNTQGWTKNR 119
           +++ +  +CG   L  +G L W +  Q+ T TQ W  N+
Sbjct: 246 VSSAIAGVCGLVTLMVFGYLHWKKETQIQTQTQKWISNK 284


>At5g55070.1 68418.m06864 2-oxoacid dehydrogenase family protein
           similar to SP|Q01205 Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex, mitochondrial precursor (EC
           2.3.1.61) {Rattus norvegicus}; contains Pfam profiles
           PF00198: 2-oxo acid dehydrogenases acyltransferase
           (catalytic domain), PF00364: Biotin-requiring enzyme
          Length = 464

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/76 (26%), Positives = 36/76 (47%)
 Frame = -3

Query: 355 DQISEGNILQRVACLADLFVNFITPTDTSVVQGANQPL*FQGL*GG*ASEPDACTDCSSA 176
           D +  GN + R++  AD  V+ + P++ +  + A +P          A +P   +   + 
Sbjct: 156 DTVEPGNKVARISTSADA-VSHVAPSEKAPEKPAPKP-------SPPAEKPKVESTKVAE 207

Query: 175 KSRAPTPPPTTPKVDS 128
           K +AP+PPP  P   S
Sbjct: 208 KPKAPSPPPPPPSKQS 223


>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 643 SSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKH 518
           +++P    H Q++P  +   R+ + R  Y P  S   P  KH
Sbjct: 445 AAIPAQVTHTQQIPVPRDTDRKRSDRDRYAPGSSRGHPTRKH 486


>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 174

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -3

Query: 214 ASEPDACTDCSSAKSRAPTPP-PTTPK 137
           +S P + T  SS+KSR+ +PP P+TP+
Sbjct: 117 SSPPPSTTSSSSSKSRSRSPPSPSTPE 143


>At1g18740.1 68414.m02337 expressed protein
          Length = 382

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 574 NLRRPYVPSRSETSPVGKHHCLSTSRIFIGVWRRQVVRKF 455
           +LRR  V S +  S    HH  ST  + +  ++RQV  KF
Sbjct: 16  SLRRDQVDSSTVVSGSSSHHEPSTMEVELDSFQRQVAEKF 55


>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative similar to SP|Q04836 31 kDa
           ribonucleoprotein, chloroplast precursor (RNA-binding
           protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
           (RNA-binding protein cp31) {Arabidopsis thaliana};
           contains InterPro entry IPR000504: RNA-binding region
           RNP-1 (RNA recognition motif) (RRM)
          Length = 329

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 374 DEAKAEAAEVMIKDGPDEEGNYFERPGKLSDYLPSPYPNENA 499
           DE++ +A+E  + +G + EG+  E  G +S+    P P+E A
Sbjct: 111 DESEGDASEGDVSEGDESEGDVSE--GAVSERAEFPEPSEEA 150


>At3g17330.1 68416.m02215 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 595

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -3

Query: 679 P*RWHLLGSMDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLSTS 500
           P +WH++  +  S   H+ LH  E   N+ V    + +   +    E   + KHH   TS
Sbjct: 363 PVKWHIIKDVPNSYFRHIILHNNE---NKPVTNSRDTQEIILKQGLEVLKLFKHHAEKTS 419


>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
           contains Pfam glycosyl transferase, group 1 family
           protein domain PF00534; C-terminal portion similar to
           mannosyltransferase GB:BAA28328 [Escherichia coli]
          Length = 487

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 669 GTSWEVWIVVLSLT*HYTSRRFHVTSQ*REDV 574
           G S E W  VLSL  H T+ RF +T +   D+
Sbjct: 98  GYSSEAWSYVLSLRNHLTNPRFRITIEHHGDL 129


>At5g57010.1 68418.m07115 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 495

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = -1

Query: 207 SPMPAQTAQVQKVELQHLHLPLPKWTATLFCFLSILECWWTADKPEAKLDHIFSKDVPHK 28
           SP P+       V LQ ++           C + + E WW  +   AKL+   + D P  
Sbjct: 124 SPRPSTELDAAAVTLQKVYKSYRTRRNLADCAVVVEELWWK-ELELAKLEPNKTNDKPES 182

Query: 27  SYRRW 13
           +  RW
Sbjct: 183 AVSRW 187


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 89  HQHSRMDKKQKSVAVHFGSGRWRCWSSTF 175
           HQ  R+  K+   A  + S +WR W + F
Sbjct: 563 HQFKRLQSKKLQHAFRYYSHQWRAWGACF 591


>At2g31955.1 68415.m03903 molybdopterin biosynthesis protein,
           putative / molybdenum cofactor biosynthesis enzyme,
           putative 3' fragment; strong similarity to SP|Q39055
           Molybdopterin biosynthesis CNX2 protein (Molybdenum
           cofactor biosynthesis enzyme CNX2) {Arabidopsis
           thaliana}
          Length = 390

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/50 (46%), Positives = 28/50 (56%)
 Frame = +1

Query: 160 LELYFLHLSSLCRHRALKLTHLTTLGITVAGSLPGPR*CPSGL*SLQTSL 309
           +E   L LSSL   + LK   +TT GIT+A  LP  + C  GL SL  SL
Sbjct: 140 IEEICLQLSSL---KGLKNLAITTNGITLAKKLPRLKEC--GLDSLNISL 184


>At4g23090.1 68417.m03328 hypothetical protein 
          Length = 179

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +3

Query: 243 SGWFAPWTTLVSVGVMKFTNKSARHATLCSILPS 344
           SGWF P  T V V V         H +L  + PS
Sbjct: 117 SGWFQPMLTDVGVAVHSSRPNGILHVSLSGVSPS 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,548,569
Number of Sequences: 28952
Number of extensions: 386733
Number of successful extensions: 1292
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)