Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20556
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 249 2e-66
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 246 1e-65
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 245 2e-65
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 245 2e-65
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 245 2e-65
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 243 1e-64
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 243 1e-64
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 241 2e-64
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 241 3e-64
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 119 2e-27
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 118 4e-27
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 118 4e-27
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 115 3e-26
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 115 3e-26
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 112 2e-25
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 112 2e-25
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 95 5e-20
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 94 7e-20
At4g37190.1 68417.m05265 expressed protein 30 1.7
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 29 2.2
At2g28400.1 68415.m03451 expressed protein contains Pfam profile... 29 3.9
At2g24200.1 68415.m02891 cytosol aminopeptidase identical to cyt... 28 6.8
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 8.9
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 249 bits (609), Expect = 2e-66
Identities = 110/135 (81%), Positives = 124/135 (91%), Gaps = 1/135 (0%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGQV 236
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 237 RAPRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 416
+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 417 VRKESESCDCLQGFQ 461
VRKE+E+CDCLQGFQ
Sbjct: 121 VRKEAENCDCLQGFQ 135
Score = 112 bits (269), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 208
Query: 680 YDIC 691
YDIC
Sbjct: 209 YDIC 212
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 246 bits (601), Expect = 1e-65
Identities = 110/135 (81%), Positives = 122/135 (90%), Gaps = 1/135 (0%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGQV 236
MREI+H+Q GQCGNQIG+KFWE+I DEHGID TG Y GD+ DLQLERINVYYNEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 237 RAPRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 416
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 417 VRKESESCDCLQGFQ 461
VRKE+E+CDCLQGFQ
Sbjct: 121 VRKEAENCDCLQGFQ 135
Score = 112 bits (269), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 149 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 208
Query: 680 YDIC 691
YDIC
Sbjct: 209 YDIC 212
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 245 bits (600), Expect = 2e-65
Identities = 109/134 (81%), Positives = 120/134 (89%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 239
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 240 APRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 419
+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 420 RKESESCDCLQGFQ 461
RKE+E+CDCLQGFQ
Sbjct: 121 RKEAENCDCLQGFQ 134
Score = 112 bits (269), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
Query: 680 YDIC 691
YDIC
Sbjct: 208 YDIC 211
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 245 bits (600), Expect = 2e-65
Identities = 109/134 (81%), Positives = 120/134 (89%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 239
MREI+H+Q GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 240 APRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 419
+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 420 RKESESCDCLQGFQ 461
RKE+E+CDCLQGFQ
Sbjct: 121 RKEAENCDCLQGFQ 134
Score = 112 bits (269), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
Query: 680 YDIC 691
YDIC
Sbjct: 208 YDIC 211
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 245 bits (600), Expect = 2e-65
Identities = 107/134 (79%), Positives = 122/134 (91%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 239
MREI+H+Q GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 240 APRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 419
+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 420 RKESESCDCLQGFQ 461
RKE+E+CDCLQGFQ
Sbjct: 121 RKEAENCDCLQGFQ 134
Score = 112 bits (269), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
Query: 680 YDIC 691
YDIC
Sbjct: 208 YDIC 211
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 243 bits (594), Expect = 1e-64
Identities = 107/134 (79%), Positives = 120/134 (89%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 239
MREI+H+Q GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 240 APRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 419
+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 420 RKESESCDCLQGFQ 461
RKE+E+CDCLQGFQ
Sbjct: 121 RKEAENCDCLQGFQ 134
Score = 112 bits (269), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 148 GTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
Query: 680 YDIC 691
YDIC
Sbjct: 208 YDIC 211
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 243 bits (594), Expect = 1e-64
Identities = 109/134 (81%), Positives = 120/134 (89%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 239
MREI+H+Q GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 240 APRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 419
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 420 RKESESCDCLQGFQ 461
RKE+E+CDCLQGFQ
Sbjct: 121 RKEAENCDCLQGFQ 134
Score = 112 bits (270), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
Query: 680 YDIC 691
YDIC
Sbjct: 208 YDIC 211
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 241 bits (591), Expect = 2e-64
Identities = 107/134 (79%), Positives = 121/134 (90%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 239
MREI+H+Q GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 240 APRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 419
+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 420 RKESESCDCLQGFQ 461
RKE+E+CDCLQGFQ
Sbjct: 121 RKEAENCDCLQGFQ 134
Score = 112 bits (270), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
Query: 680 YDIC 691
YDIC
Sbjct: 208 YDIC 211
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 241 bits (590), Expect = 3e-64
Identities = 109/134 (81%), Positives = 120/134 (89%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 239
MREI+H+Q GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 240 APRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 419
+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 420 RKESESCDCLQGFQ 461
RKE+E+ DCLQGFQ
Sbjct: 121 RKEAENSDCLQGFQ 134
Score = 112 bits (270), Expect = 2e-25
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G LISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE +DNEAL
Sbjct: 148 GTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEAL 207
Query: 680 YDIC 691
YDIC
Sbjct: 208 YDIC 211
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 119 bits (287), Expect = 2e-27
Identities = 58/136 (42%), Positives = 84/136 (61%), Gaps = 3/136 (2%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 233
MREI+ + GQ G Q+G WE+ EHGI P G DS + + N +++E S GQ
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 234 VRAPRHP-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 410
PR +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L
Sbjct: 61 -HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCL 119
Query: 411 DVVRKESESCDCLQGF 458
+ +RK +++C LQGF
Sbjct: 120 ERLRKLADNCTGLQGF 135
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/64 (43%), Positives = 43/64 (67%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G L+ ++ ++ + +++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+
Sbjct: 150 GSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVVLLDNEAI 209
Query: 680 YDIC 691
YDIC
Sbjct: 210 YDIC 213
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 118 bits (284), Expect = 4e-27
Identities = 58/136 (42%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 233
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 234 VRAPRHP-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 410
PR VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 411 DVVRKESESCDCLQGF 458
D VRK +++C LQGF
Sbjct: 120 DRVRKLADNCTGLQGF 135
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G L+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAI 209
Query: 680 YDIC 691
YDIC
Sbjct: 210 YDIC 213
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 118 bits (284), Expect = 4e-27
Identities = 58/136 (42%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 233
MREI+ + GQ G Q+G WE+ EHGI P G D+ + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 234 VRAPRHP-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 410
PR VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 411 DVVRKESESCDCLQGF 458
D VRK +++C LQGF
Sbjct: 120 DRVRKLADNCTGLQGF 135
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G L+ ++ +Y + +++ PSP+VS VVEPYN+ LS H L+E+TD +DNEA+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAI 209
Query: 680 YDIC 691
YDIC
Sbjct: 210 YDIC 213
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 115 bits (276), Expect = 3e-26
Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 233
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 VRAPRHP-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 410
PR VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 411 DVVRKESESCDCLQGF 458
D +RK +++C LQGF
Sbjct: 120 DRIRKLADNCTGLQGF 135
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAI 209
Query: 680 YDIC 691
YDIC
Sbjct: 210 YDIC 213
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 115 bits (276), Expect = 3e-26
Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 233
MRE + + GQ G Q+G WE+ EHGI P G GD + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 VRAPRHP-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 410
PR VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 411 DVVRKESESCDCLQGF 458
D +RK +++C LQGF
Sbjct: 120 DRIRKLADNCTGLQGF 135
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAI 209
Query: 680 YDIC 691
YDIC
Sbjct: 210 YDIC 213
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 112 bits (270), Expect = 2e-25
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 233
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 VRAPRHP-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 410
PR VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 411 DVVRKESESCDCLQGF 458
D +RK +++C LQGF
Sbjct: 120 DRIRKLADNCTGLQGF 135
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAI 209
Query: 680 YDIC 691
YDIC
Sbjct: 210 YDIC 213
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 112 bits (270), Expect = 2e-25
Identities = 56/136 (41%), Positives = 80/136 (58%), Gaps = 3/136 (2%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 233
MRE + + GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 234 VRAPRHP-VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVL 410
PR VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD L
Sbjct: 61 -HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 411 DVVRKESESCDCLQGF 458
D +RK +++C LQGF
Sbjct: 120 DRIRKLADNCTGLQGF 135
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/64 (46%), Positives = 45/64 (70%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEAL 679
G L+ ++ +Y + ++V PSP+VS +VVEPYN+ LS H L+E+TD + +DNEA+
Sbjct: 150 GSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAI 209
Query: 680 YDIC 691
YDIC
Sbjct: 210 YDIC 213
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 94.7 bits (225), Expect = 5e-20
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Frame = +3
Query: 63 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 242
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 243 PRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 416
+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 417 VRKESESCDCLQGF 458
+ +E++ D L+GF
Sbjct: 122 IDREADGSDSLEGF 135
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 676
G L+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +DN A
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTA 209
Query: 677 L 679
L
Sbjct: 210 L 210
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 94.3 bits (224), Expect = 7e-20
Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Frame = +3
Query: 63 REIVHLQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 242
REI+ LQ GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 243 PRHPVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 416
+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 417 VRKESESCDCLQGF 458
+ +E++ D L+GF
Sbjct: 122 IDREADGSDSLEGF 135
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 500 GHPLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNATLSVHQLVENTDETYCIDNEA 676
G L+ + + Y +++ TYSV P+ + SD VV+PYN+ L++ +L N D +DN A
Sbjct: 150 GSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTA 209
Query: 677 L 679
L
Sbjct: 210 L 210
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 60 MREIVHLQAGQCGNQIGAKFWEIISDEHGI 149
MREIV +Q G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +3
Query: 393 LVDSVLDVVRKESESCDCLQGF 458
+++SV VVRKE+E+C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At2g28400.1 68415.m03451 expressed protein contains Pfam profile
PF04520: Protein of unknown function, DUF584
Length = 162
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 59 NEGNRSSTGRPMW*PDWS*VLGDHLRRAR 145
++ ++++ P+ PDWS +LGD RR R
Sbjct: 68 SDSGKAASSLPVNVPDWSKILGDESRRQR 96
>At2g24200.1 68415.m02891 cytosol aminopeptidase identical to
cytosol aminopeptidase SP:P30184 from [Arabidopsis
thaliana]; contains Pfam profiles: PF00883 cytosol
aminopeptidase family catalytic domain, PF02789: cytosol
aminopeptidase family N-terminal domain
Length = 520
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Frame = -2
Query: 407 DRVNELSTL---CVVSLGPVVAGAGLSEDEVVR-TEDLSERSG 291
D++ +L+TL CV++LG +AG DE+ + SERSG
Sbjct: 393 DKIVDLATLTGACVIALGTSMAGIYTPSDELAKEVIAASERSG 435
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 66 EIVHLQAGQCGNQIGAKFWEIISD 137
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,237,016
Number of Sequences: 28952
Number of extensions: 337284
Number of successful extensions: 1028
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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