Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20555
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    28   0.92 
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    27   1.6  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   2.8  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    26   3.7  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    26   4.9  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    26   4.9  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   4.9  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   8.6  

>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 449 TCVPFWRSYQEHLPHC*CCLAWVSLTIYVFTK 544
           TC  + R+Y  HL      +AW+ L +YV+ K
Sbjct: 311 TCRRYKRAYVRHLLQARELVAWILLQLYVYIK 342


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 221 LYCGRIELEDGCGVTVGRVREVSGQTHQVTACRALMNPLYMTGSTLALW 367
           +Y G    ED   +    +RE +    + +  R  +NP Y+TGS+LA++
Sbjct: 154 IYGGYKSFEDYLSIHYRLLREDAVSPLRESVLRYKVNPNYITGSSLAVY 202


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 337 LYDWQYLGFMVLLPMVLHWFF 399
           L+ W Y+ +  LLP +LH  F
Sbjct: 263 LFPWIYMDYKTLLPQILHRVF 283


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 447  LYDNAILGFTPGDHVNEKPMQNHGQED 367
            LY N++LG   GD VNE        ED
Sbjct: 1836 LYRNSVLGIFQGDIVNENDENYEDSED 1862


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 582 VDYATVYTNPKVLLVNTYIVRLTQARQ 502
           +D+  VY NPK  L  +Y++R    R+
Sbjct: 53  IDFDEVYKNPKTKLCCSYVIRKALIRK 79


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 361 FMVLLPMVLHWFFIDMVTR 417
           F  L+P +LHWF I  + R
Sbjct: 356 FQALMPDILHWFGIKKIDR 374


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 YDWQYLGFMVLLPMVLHWFFIDMVTRG 420
           Y+  Y  F VLL M++ ++FI   T G
Sbjct: 196 YEGTYGVFFVLLGMIISYYFIGSTTAG 222


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 514 GQSHYICVHQKHFRIGIHCCIIHSQIIKR 600
           G S ++CV  +HF   IH   +    I++
Sbjct: 269 GSSDWVCVSTQHFHCNIHVHSVSGNAIRK 297


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/57 (21%), Positives = 27/57 (47%)
 Frame = -2

Query: 488 ASVPDMTSKKAHMCCMITPFSALPLVTMSMKNQCKTMGRRTIKPRYCQSYREGSSTH 318
           A+   + S KA    +++ F+      +S++  CK     +I   + + Y+E ++ H
Sbjct: 182 ATGTSILSSKAVQTLLVSDFTENEPKHLSIRPNCKDNNTPSISNTFIEPYKENNTEH 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,080
Number of Sequences: 5004
Number of extensions: 54003
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)