Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20555
         (606 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0103 - 12383585-12384700                                         29   2.9  
03_04_0187 - 18236041-18236643                                         29   2.9  
09_06_0017 - 20248672-20248783,20248982-20249229,20249314-202494...    28   5.0  
08_02_1475 - 27369088-27369199,27369404-27369651,27369734-273699...    28   6.6  
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    28   6.6  
04_03_0815 - 19949584-19950111,19950210-19950632                       27   8.7  

>09_03_0103 - 12383585-12384700
          Length = 371

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/63 (34%), Positives = 30/63 (47%)
 Frame = +2

Query: 209 SCPGLYCGRIELEDGCGVTVGRVREVSGQTHQVTACRALMNPLYMTGSTLALWSSCPWFC 388
           SC GL C    L D  G  V  +   +G++        L  P+Y  GS+   +SSC W C
Sbjct: 106 SCNGLLC----LGDSTGA-VQLLNPTTGES------ATLPMPMYTAGSSQ--FSSCNWHC 152

Query: 389 IGF 397
           +GF
Sbjct: 153 LGF 155


>03_04_0187 - 18236041-18236643
          Length = 200

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 583 CGLCNSVYQSESAFGEHIYSETDPGEAALTMRQVFLI*PP 464
           C +C   + S  A G H  S   P  AAL M  +    PP
Sbjct: 50  CSVCGKAFPSHQALGGHKASHRKPPTAALPMHVIDAPPPP 89


>09_06_0017 -
           20248672-20248783,20248982-20249229,20249314-20249480,
           20249916-20250079,20251275-20251555
          Length = 323

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 313 MPCVDEPSLYD-WQYLGFMVLLPMVLHWFFIDMVTRGKAENGVIIQHMCAFLEVI 474
           +P  ++P  Y  +QY+ ++V   ++L  F + +V   K +NG    H C +L  +
Sbjct: 260 LPQTNQPPKYKAYQYVLWVVAFVLLLVGFVVSLVMLFKGKNGNDGCHWCHYLNCV 314


>08_02_1475 -
           27369088-27369199,27369404-27369651,27369734-27369900,
           27370386-27370621,27371340-27371620
          Length = 347

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 313 MPCVDEPSLYD-WQYLGFMVLLPMVLHWFFIDMVTRGKAENGVIIQHMCAFLEVI 474
           +P  ++P  Y  +QY+ + V L ++L  F I +V   K +NG    H C +L  I
Sbjct: 284 LPQTNQPRKYRAYQYVLWAVALFLLLVGFVIALVMLFKGKNGNDGCHWCHYLNCI 338


>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 166 AQL*IVPLQNGSCKIVSRTVLWSY*TR--RWVWSDCGACPRGFRTNASSYC 312
           AQ  +  L  G+C I +  VLW    R  RW W +    PR   T++   C
Sbjct: 398 AQFCLHALWFGNCHIRAIAVLWIDFVREIRWCWEESERLPRMKSTSSIDLC 448


>04_03_0815 - 19949584-19950111,19950210-19950632
          Length = 316

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 491 AASVPDMTSKKAHMCCMITPFSALPLVTMSMKNQCK 384
           AAS  +  ++ AH CC  TP +A   V +S    CK
Sbjct: 236 AASAGEGDAEDAHSCCFETPAAAAD-VAVSTATSCK 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,052
Number of Sequences: 37544
Number of extensions: 366088
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)