Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20555
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 5e-12
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08) 30 1.7
SB_4893| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_46883| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 29 3.9
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) 29 3.9
SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 29 3.9
SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 29 3.9
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 3.9
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18) 28 5.1
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036) 28 5.1
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 6.7
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 28 6.7
SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26) 27 8.9
SB_10476| Best HMM Match : Lactamase_B (HMM E-Value=7.4e-08) 27 8.9
SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_18415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 623
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/87 (39%), Positives = 48/87 (55%)
Frame = +1
Query: 244 RRWVWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHWFFIDMVTRGK 423
R + C ACPRG+R+ C+ C L+DW YLGF++L +VLHWFFID +
Sbjct: 41 RNGKFGKCQACPRGYRSYGD-LCVKCTKSLRLHDWLYLGFIILTVIVLHWFFIDYFVQRV 99
Query: 424 AENGVIIQHMCAFLEVISGTLAALLVL 504
+N +++ VI TLAA+ L
Sbjct: 100 RQNMILL----FVSSVIETTLAAIFTL 122
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +3
Query: 513 GSVSLYMCSPKALSDWYTLLHNPQPDY 593
G+++L C + LSDWYT+ NP+PDY
Sbjct: 129 GTLNLTACWTERLSDWYTVFFNPKPDY 155
>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
Length = 1381
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 247 RWVWSDCGACPRGFRT 294
+WVW CG C R FRT
Sbjct: 437 KWVWRHCGDCNRYFRT 452
>SB_4893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -3
Query: 118 YNSLRIFFFSEVLFVIISESYVRQR 44
Y S R FFFS+VL VII ++Y +R
Sbjct: 209 YKSDRRFFFSKVLVVIIDQAYRYRR 233
>SB_46883| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
Length = 370
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 450 HVCLFGGHIRNTCRIVSAASPGSVSLYMCSPKALSDWYTLLHNP 581
H+CL GH+R+ C + C+ K+ +TLLHNP
Sbjct: 84 HICLRPGHMRDRCHTTT----------FCNCKSERKHHTLLHNP 117
>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
Length = 1740
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 450 HVCLFGGHIRNTCRIVSAASPGSVSLYMCSPKALSDWYTLLHNP 581
H+CL GH+R+ C + C+ K+ +TLLHNP
Sbjct: 473 HICLRPGHMRDRCHTTT----------FCNCKSERKHHTLLHNP 506
>SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
Length = 471
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 450 HVCLFGGHIRNTCRIVSAASPGSVSLYMCSPKALSDWYTLLHNP 581
H+CL GH+R+ C + C+ K+ +TLLHNP
Sbjct: 309 HICLRPGHMRDRCHTTT----------FCNCKSERKHHTLLHNP 342
>SB_8751| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
Length = 637
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 450 HVCLFGGHIRNTCRIVSAASPGSVSLYMCSPKALSDWYTLLHNP 581
H+CL GH+R+ C + C+ K+ +TLLHNP
Sbjct: 378 HICLRPGHMRDRCHTTT----------FCNCKSERKHHTLLHNP 411
>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1244
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 450 HVCLFGGHIRNTCRIVSAASPGSVSLYMCSPKALSDWYTLLHNP 581
H+CL GH+R+ C + C+ K+ +TLLHNP
Sbjct: 267 HICLRPGHMRDRCHTTT----------FCNCKSERKHHTLLHNP 300
>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
Length = 1044
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +1
Query: 265 CGACPRGFRTNASSYCMPCVDEPSLYDWQYLG-FMVL----LPMVLHWFFIDMVTRGKAE 429
CGAC RG+ S C C P L Q++G F+VL + ++L+W R +
Sbjct: 303 CGACSRGYYRMFSG-CNKCPSTP-LVITQFVGVFLVLALIAVVVILNWKKSRADKRSLTD 360
Query: 430 NGV-IIQHMCAFLEVISGTLAA 492
++ + F +++SGTL A
Sbjct: 361 QLFGSLKIVIGFYQILSGTLNA 382
>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 244 RRWVWSDCGACPRGFRT 294
RRW W C C R FRT
Sbjct: 303 RRWEWQYCDVCHRYFRT 319
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 277 DTPHSHSTPIFEFNTTTIQSWTRSYSCHSVVEQSTA 170
D+P ++P E +WTR+YSC S T+
Sbjct: 953 DSPRRFTSPAHEQYLPCPHAWTRTYSCSSRTSNITS 988
>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
Length = 1336
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 247 RWVWSDCGACPRGFRT 294
+W W CG C R FRT
Sbjct: 484 QWAWKHCGDCNRYFRT 499
>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1347
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 258 PHPSSSSIRPQYSPGHDLTA 199
PH S+SS PQY G DL A
Sbjct: 825 PHSSASSEDPQYPEGRDLAA 844
>SB_10244| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 205
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 262 DCGACPRGFRTNASSYCMPC 321
DCG C GF S C PC
Sbjct: 92 DCGRCKPGFYNMTSEGCRPC 111
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 262 DCGACPRGFRTNASSYCMPC 321
DCG C GF S C PC
Sbjct: 58 DCGRCKPGFYNMTSEGCRPC 77
>SB_13504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4924
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 265 CGACPRGFRTNASSYCMPC 321
C CPRG N+ C PC
Sbjct: 4558 CVVCPRGMYGNSKGECSPC 4576
>SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26)
Length = 184
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = +1
Query: 454 CAFLEVISGTLAALLVLPRLGQSHYICVHQKHFR---IGIHCCIIHSQII 594
C F +S LA LL + S +I +H K FR H C + S I
Sbjct: 27 CFFESTVSALLAGLLSRWSITSSFWIYIHSKQFRTCKTWEHNCCVRSNSI 76
>SB_10476| Best HMM Match : Lactamase_B (HMM E-Value=7.4e-08)
Length = 866
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 262 HSTPIFEFNTTTIQSWTRSY 203
H TP+ F T T QSW R +
Sbjct: 351 HMTPMSLFQTNTYQSWVREF 370
>SB_41600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 291 PETSRTRPTVTPHPSSSSIRPQYSP 217
P RTRP +TP P S + P SP
Sbjct: 342 PPIPRTRPAMTPPPISPTTGPPKSP 366
>SB_13469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2429
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 270 PTVTPHPSSSSIRPQYSPGHDLTAAI 193
P TP P+ IRP+Y P D+ +I
Sbjct: 1245 PPTTPPPTPQIIRPKYDPQTDVNYSI 1270
>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 328 EPSLYDWQYLGFMVLLPMVLHWFFIDMVTRGKAENGVIIQHMC 456
EP L++ + +++++ WF I + G + + +HMC
Sbjct: 1150 EPDLFELEQTDYLIVVDYASRWFEIRKL--GSTTSAAVTRHMC 1190
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,057,810
Number of Sequences: 59808
Number of extensions: 450608
Number of successful extensions: 1247
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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