Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20555
         (606 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven transme...    63   2e-10
AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical ...    63   2e-10
L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease pr...    32   0.28 
AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered cut...    32   0.28 
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical...    30   1.1  
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL032626-7|CAA21544.1|   79|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF304119-1|AAG50232.1|  326|Caenorhabditis elegans seven
           transmembrane protein protein.
          Length = 326

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +1

Query: 259 SDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHWFFIDMVTR-GKAENG 435
           S CG C  G+R NA S C  C      YDW YL F+ LLP++LH  FI +  +  +    
Sbjct: 45  SRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFIRIARKYCRTRYY 104

Query: 436 VIIQHMCAFLEVISGTLAALLVLP 507
            + +++C  LE +   + A+L+ P
Sbjct: 105 EVSEYLCVILENVIACVIAVLIYP 128


>AF068718-6|AAC17769.2|  326|Caenorhabditis elegans Hypothetical
           protein R01B10.5 protein.
          Length = 326

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +1

Query: 259 SDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHWFFIDMVTR-GKAENG 435
           S CG C  G+R NA S C  C      YDW YL F+ LLP++LH  FI +  +  +    
Sbjct: 45  SRCGPCSFGYRNNAMSICESCDTPLQPYDWMYLLFIALLPLLLHMQFIRIARKYCRTRYY 104

Query: 436 VIIQHMCAFLEVISGTLAALLVLP 507
            + +++C  LE +   + A+L+ P
Sbjct: 105 EVSEYLCVILENVIACVIAVLIYP 128


>L29440-1|AAA98752.1|  570|Caenorhabditis elegans endoprotease
           protein.
          Length = 570

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 265 CGACPRGFRTNASSYCMPCVDEPSLYDWQ 351
           C  C +G+   +  YC PC  E S   WQ
Sbjct: 452 CEKCSKGYGKGSIGYCRPCCPEGSTKSWQ 480


>AF039719-1|AAB96754.1|  942|Caenorhabditis elegans Blistered
           cuticle protein 4, isoformd protein.
          Length = 942

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 265 CGACPRGFRTNASSYCMPCVDEPSLYDWQ 351
           C  C +G+   +  YC PC  E S   WQ
Sbjct: 824 CEKCSKGYGKGSIGYCRPCCPEGSTKSWQ 852


>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
            protein Y105C5B.2 protein.
          Length = 1044

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 456  CLFGGHIRNTCRIVSAASPGSVSL 527
            C+FG  +   CR+ S  +PGS+ L
Sbjct: 948  CIFGDTVNMACRMASTGNPGSIQL 971


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 193 NGSCKIVSR-TVLWSY*TRRWVWSD--CGACPRGFRTNASSYCMPC 321
           NG+C   S+ T+++   +   + +D  CG C  GF  N + YC  C
Sbjct: 73  NGTCHCPSQSTLIFRDASGNLLTNDAFCGNCASGFYRNDNGYCTKC 118


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +1

Query: 439 IIQHMCAFLEVISGTLAALLVL----PRLGQSHYICVHQKHFRI 558
           I Q  CAFL + + ++ ALL+L     +LG   Y+ ++   F I
Sbjct: 8   IFQRTCAFLGLFNNSILALLILYKSPKKLGNYKYLMMYISIFEI 51


>AL032626-7|CAA21544.1|   79|Caenorhabditis elegans Hypothetical
           protein Y37D8A.8 protein.
          Length = 79

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 11/52 (21%)
 Frame = +2

Query: 443 YNTCVPFWRSYQEHLPHC*C-----------CLAWVSLTIYVFTKSTFGLVY 565
           Y    P ++ YQE+ P C C           C AW+ + + +F    F L+Y
Sbjct: 3   YEKVAPSFKPYQEYCPRCRCTVVTVVEYEMGCFAWLIIILIIFV--AFFLIY 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,637,037
Number of Sequences: 27780
Number of extensions: 315561
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)