Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20555
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.58 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.58 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.3  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   2.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.4  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +3

Query: 456 CLFGGHIRNTCRIVSAASPGSVSL------YMCSPK 545
           CLFG  +  T R  +   PG +++      Y+C P+
Sbjct: 532 CLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPE 567


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
 Frame = +3

Query: 456 CLFGGHIRNTCRIVSAASPGSVSL------YMCSPK 545
           CLFG  +  T R  +   PG +++      Y+C P+
Sbjct: 532 CLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPE 567


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 182  FHYRMAAVRSCPGLYCGRIELEDGC 256
            +H+R+A ++  P L  G++ L  GC
Sbjct: 984  WHHRLAEIKRRPDLEYGKVWLFFGC 1008


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 407 WSPGVKPRMALS-YNTCVPFWRSYQEHLP 490
           WS  ++  +  S Y T + ++  Y+E+LP
Sbjct: 408 WSTSLRDPVFFSIYKTILDYYHKYKENLP 436


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +1

Query: 256 WSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHW 393
           +++C   P  FR       MPC   PS      + F+    + L W
Sbjct: 293 FTECRCDPGYFRAEKDPKKMPCTQPPSAPQNLTVNFVDQSTVFLSW 338


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 407 WSPGVKPRMALS-YNTCVPFWRSYQEHLP 490
           WS  ++  +  S Y T + ++  Y+E+LP
Sbjct: 408 WSTSLRDPVFFSIYKTILDYYHKYKENLP 436


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 407 WSPGVKPRMALS-YNTCVPFWRSYQEHLP 490
           WS  ++  +  S Y T + ++  Y+E+LP
Sbjct: 34  WSTSLRDPVFFSIYKTILDYYHKYKENLP 62


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 254 CGVTVGRVREVSGQTHQVTACRALMNPLYMTG 349
           C   VG +   + +  QVT C+A     Y  G
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKATNEETYRGG 576


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 254 CGVTVGRVREVSGQTHQVTACRALMNPLYMTG 349
           C   VG +   + +  QVT C+A     Y  G
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKATNEETYRGG 576


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +2

Query: 254 CGVTVGRVREVSGQTHQVTACRALMNPLYMTG 349
           C   VG +   + +  QVT C+A     Y  G
Sbjct: 545 CQQCVGNLASNNDRIRQVTKCKATNEETYRGG 576


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = +1

Query: 220 TVLWSY*TRRWVWSDCGACPRGFRTNASSYCMPCVDEPSLYDWQYLGFMVLLPMVLHWFF 399
           T+ W+      VW      P GF T+ S   +   +E  ++      F   +PM+L  ++
Sbjct: 173 TIPWALMPVMGVWGRF--VPEGFLTSCSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYY 230

Query: 400 IDMV 411
              +
Sbjct: 231 YSQI 234


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = -1

Query: 231 PQYSPGHDLTAAIL*W 184
           P ++PGHD    +  W
Sbjct: 24  PHFAPGHDAIVHLFEW 39


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 257 GVTVGRVREVSGQTHQVTACRALMNPLY 340
           G+  GRV+E      Q+T  R  + P Y
Sbjct: 271 GLVGGRVKEALRIARQMTTSRKKVLPYY 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,128
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)