Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20555
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    29   2.4  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    29   2.4  
At4g06534.1 68417.m00946 hypothetical protein                          28   5.5  
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ...    27   7.3  
At1g73870.1 68414.m08554 zinc finger (B-box type) family protein       27   7.3  
At1g14220.1 68414.m01683 ribonuclease T2 family protein contains...    27   7.3  
At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR...    27   9.6  

>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -1

Query: 441 DNAILGFTPGDHVNEKPMQNHGQEDHKAKVLPVI*RGFINARHAVT*CVCPE--TSRTRP 268
           ++A++G T  +H       +HG +   ++V+P       N+++ V  C  P+  TS T P
Sbjct: 104 NDAVVGVTSTEHERNAHFMDHGFKRKSSEVIPG------NSQYPVAPCSFPQLNTSETAP 157

Query: 267 TVTPH 253
              PH
Sbjct: 158 FSFPH 162


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -1

Query: 291 PETSRTRPTVTPHPSSSSIRPQYSP--GHD 208
           PE SRT P+V P+      RP  +P  GHD
Sbjct: 149 PEASRTSPSVRPYQFPGVQRPNLNPQYGHD 178


>At4g06534.1 68417.m00946 hypothetical protein
          Length = 405

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 462 FGGHIRNTCRIVSAASPGSVSLYMCSPKALSD 557
           FG  +     +VS ASPGSV L +C+     D
Sbjct: 118 FGFAVHEPAPLVSGASPGSVLLGLCTTAGSED 149


>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 395

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 583 CGLCNSVYQSESAFGEHIYSET 518
           CG+CN  Y+S  A  +H+ S++
Sbjct: 70  CGICNKGYRSSKAHEQHLKSKS 91


>At1g73870.1 68414.m08554 zinc finger (B-box type) family protein
          Length = 392

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 407 WSPGVKPRMALSYNTCVP 460
           W  G+KP   L  NTC+P
Sbjct: 297 WKTGIKPECMLGGNTCLP 314


>At1g14220.1 68414.m01683 ribonuclease T2 family protein contains
           similarity to S-like ribonuclease PD1 GI:9957752 from
           [Prunus dulcis]; contains ribonuclease T2 family
           histidine protein motif
          Length = 228

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 474 YDLQKGTHVLYDNAILGFTPGDHVNEKPMQN 382
           Y+L K T+ + D   +GFTPG   N+ P +N
Sbjct: 163 YNLDKITNAIKDG--IGFTPGIECNKDPERN 191


>At4g12010.1 68417.m01911 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1219

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 310  CMPCVDEPSLYDWQYLGFMVLLPMVLHWFFIDMV 411
            C P  + PS +  Q LG  + +P+  HW  I+ V
Sbjct: 1003 CYPATEIPSWFCHQRLGRSLEIPLPPHWCDINFV 1036


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,640,963
Number of Sequences: 28952
Number of extensions: 288413
Number of successful extensions: 839
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)