Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20554
         (506 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   0.29 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      24   0.68 
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   6.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   6.3  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.29
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 250 PDTQLGIGPPPAPAHSPL 303
           PD ++ + P PAP  SPL
Sbjct: 82  PDPEIPVAPEPAPLASPL 99


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.2 bits (50), Expect = 0.68
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 501 DSYEQEHYETPEHRHGDGR 445
           + +++E Y TPE  H +GR
Sbjct: 38  EGWDEEGYHTPESLHYEGR 56


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +2

Query: 242 SYCQILNSVLDRPLLRP 292
           +Y ++L+++ D+P LRP
Sbjct: 425 AYGELLHALSDKPELRP 441


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 313  FKDLCNHEDSPLAR 354
            FK+LC  E+ PL R
Sbjct: 2170 FKNLCGCEEYPLLR 2183


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 93  VIATLRNVLARGTC 134
           ++AT+R+V+A  TC
Sbjct: 636 LVATVRHVMAPSTC 649


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,707
Number of Sequences: 336
Number of extensions: 2851
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)