Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20554
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.53 
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   2.1  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    26   3.7  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   3.7  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    25   4.9  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   6.5  
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    25   8.6  

>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 346 LARARLNLTNELDSNPVSSERGANYNGEVWFKAATIAVP-VFGGLIMFLLVTVA 504
           L   R+ L  +LDS   ++E  A Y      KAA IAVP V  GLI+  LV  A
Sbjct: 170 LTGPRILLAKDLDSATAAAENAAFYGPRRNIKAA-IAVPSVILGLILVALVYYA 222


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 136 THVPRANTLRSVAITPNSISIRFFGFIQSDICGLRRSIFTVCSR 5
           +H   +  L+ +  T N + I+F G +   +CG++ S    C R
Sbjct: 322 SHPDNSLILQRLYSTNNELRIKFLGRLLGHVCGVQISKLFSCGR 365


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 301 LHCCFKDLCNHEDSPLARARLNLTNEL 381
           +H    +  NH DS  A+  LNLT EL
Sbjct: 324 VHRAMLEFINHADSNEAKELLNLTKEL 350


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 215 LTESEEAVLSYCQILNSVLDRPLLRPTLHFIAASKICATMKTVHWRELD 361
           LT+    V S  Q+L+ V     L     ++   +IC+ +  VH + LD
Sbjct: 119 LTKYHNLVRSCMQVLHQVQYSQELLSKKQYLPTLRICSEISEVHLKRLD 167


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 444 GDHRRAGVRGSHNVPARNCR 503
           GD+R +G    H VPA +C+
Sbjct: 131 GDYRGSGYDRGHQVPAADCK 150


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 133 HVPRANTLRSVAITPNSISIRFFGFIQSD 47
           HVP    ++S A+T NS S  F G  ++D
Sbjct: 233 HVPHTGRIKSFAVTKNSSSY-FLGDAKND 260


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 173 PAPRHHSRHGCLHH 214
           P PRHH  H   HH
Sbjct: 50  PPPRHHKEHKKSHH 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,109
Number of Sequences: 5004
Number of extensions: 47076
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)