Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20554
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0092 - 22323049-22323224,22323840-22323887,22323962-223240... 32 0.23
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 29 1.6
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 29 2.1
04_01_0167 + 1864956-1865495 29 2.1
11_01_0349 - 2614682-2614721,2614881-2614955,2615346-2615538,261... 29 2.8
06_01_1097 + 8996985-8997635 29 2.8
05_03_0177 - 9245131-9245793 29 2.8
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 28 3.7
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576... 28 3.7
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 28 3.7
03_02_0664 - 10262690-10263273,10263594-10263726,10263826-102640... 28 3.7
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 28 3.7
07_01_0746 + 5714443-5714580,5715175-5715261,5715400-5715657,571... 28 5.0
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 28 5.0
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 28 5.0
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 27 6.5
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 27 6.5
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 27 6.5
02_02_0610 - 12113162-12113965 27 6.5
01_01_0361 + 2838979-2841745,2841897-2842285 27 6.5
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 27 6.5
07_01_0205 + 1481380-1481892 27 8.7
04_03_0832 + 20139299-20139520,20139822-20141114,20142697-201428... 27 8.7
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119... 27 8.7
02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072 27 8.7
01_06_1267 + 35874358-35875452 27 8.7
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 27 8.7
>05_05_0092 -
22323049-22323224,22323840-22323887,22323962-22324016,
22324260-22324360,22324457-22324518,22324683-22324881,
22325107-22325254,22325331-22325377,22325928-22325995,
22326428-22326542,22326657-22326816
Length = 392
Score = 32.3 bits (70), Expect = 0.23
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2
Query: 218 TESEEAVLSYCQILNSVLDRPL 283
TESE AVLSYC+ L+ V D PL
Sbjct: 177 TESENAVLSYCEYLHCVGDFPL 198
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 84 EFGVIATLRNVLARGTCVGLHVAAAVTANVQLPDTTQGTDVSII 215
E G +A++ NV A C G + A + NVQL + + + I+
Sbjct: 543 EHGAVASVENVGAASHCTGNVTSGASSVNVQLENPAETKSLGIL 586
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Frame = +2
Query: 74 DRDGVRCYCNTA----QCVSTGYM----CRSPRGGGCYSERPAPRHHSRHGCLHHLTESE 229
D DG RCYC+ V G C+SP CY + R C HH +
Sbjct: 199 DYDGYRCYCSDGYEGNPYVDGGCRDIDECKSPHIYPCYGDCKNTRGGYDCQC-HHGYKGN 257
Query: 230 EAVLSYCQILN 262
++L+ CQ +N
Sbjct: 258 ASILNGCQDIN 268
>04_01_0167 + 1864956-1865495
Length = 179
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 101 NTAQCVSTGYMCRSPRGGGCYSERPAPRHHSRHGCLHHLTE 223
+ A ST C +PR G S APRHH LH + E
Sbjct: 47 HAASLRSTLPPCSTPRRAGQRSSTAAPRHHRPSPALHVVGE 87
>11_01_0349 -
2614682-2614721,2614881-2614955,2615346-2615538,
2615654-2616287
Length = 313
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Frame = +2
Query: 131 MCRSPRGGGCYSERPAPRHHSR------HGCLHHLTES 226
MC S GGG Y PA + R HG +HH ES
Sbjct: 177 MCYSTSGGGSYPTSPANSYAYRRAADHDHGDMHHADES 214
>06_01_1097 + 8996985-8997635
Length = 216
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 223 IRRSGAILLPDTQLGIGPPPAPAHS 297
+ RSGA+ T GPPPAPA S
Sbjct: 8 LERSGALKTNPTGSSTGPPPAPAAS 32
>05_03_0177 - 9245131-9245793
Length = 220
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 223 IRRSGAILLPDTQLGIGPPPAPAHS 297
+ RSGA+ T GPPPAPA S
Sbjct: 8 LERSGALKTNPTGSSAGPPPAPAAS 32
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 209 HHLTESEEAVLSYCQILNSVLDRPLLRP 292
HHL E+ LS QI+ ++L RP++ P
Sbjct: 436 HHLPETRGLCLSEEQIVRTILRRPIIGP 463
>03_05_0793 +
27755704-27756386,27756473-27757274,27757379-27757634,
27758355-27758566,27760494-27760709
Length = 722
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 203 IRALSGVWELDVRCNSRRHVETDTCTPC*HIAQCCNNTELHLDPFLW 63
IR S ++ + R +DT P A+CCN+ ++ +P W
Sbjct: 528 IRYKSKYSHVNFLASPRGSHSSDTVIPTLFFAECCNDNDITDEPLCW 574
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 209 HHLTESEEAVLSYCQILNSVLDRPLLRP 292
HHL E+ LS QI+ ++L RP++ P
Sbjct: 329 HHLAETRGLCLSEEQIVRTILRRPVIGP 356
>03_02_0664 -
10262690-10263273,10263594-10263726,10263826-10264016,
10264094-10264219,10264537-10264616,10265312-10265375,
10265470-10265554
Length = 420
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 224 SEEAVLSYCQILNSVLD-RPLLRPTLHFIAA 313
SEEA S C+++ S +D P RPT+ +AA
Sbjct: 358 SEEAARSLCEVVRSCIDPDPKRRPTMAEVAA 388
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 149 GGGCYSERPAPRHHSRHGCLHH 214
GGG + PAP HH H HH
Sbjct: 337 GGGSEAPSPAPMHHHGHHHHHH 358
>07_01_0746 +
5714443-5714580,5715175-5715261,5715400-5715657,
5715765-5715929,5716106-5716159,5716318-5716464,
5716735-5717112
Length = 408
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 23 DGSSESTDIGLNEAKETDRDGVRCYCNTAQCVSTGYMCRSPRGGGCYSER 172
DG+ ST +G E + G Y Q V + ++P+G G Y+E+
Sbjct: 330 DGTHTSTQMGSGRFPE-EGFGKASYFKNIQVVDSSNQLKAPKGVGTYTEQ 378
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 172 TFAVTAAATWRPTHVPRANTLRSVAITPNSIS 77
TF+ AAA PT++ R TL A TP +S
Sbjct: 4 TFSAAAAAAASPTYLHRPRTLAPPASTPARLS 35
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +1
Query: 301 LHCCFKDLCNHEDSPLARARL--NLTNELDSNPVSSERGANYNGEVWFKAATIAVPVF 468
L C FK + + +D+ LAR ++ +L + LDSNP + E Y W + ++ + VF
Sbjct: 1628 LVCIFKYMQSCQDT-LARTKILSDLLDLLDSNPSNVEALVEYGWSSWLE-TSVKLDVF 1683
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 134 TCTPC*HIAQCCNNTELH 81
+CTPC + CCN +E+H
Sbjct: 1445 SCTPCVINSICCNTSEVH 1462
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 134 TCTPC*HIAQCCNNTELH 81
+CTPC + CCN +E+H
Sbjct: 894 SCTPCVINSICCNTSEVH 911
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 301 LHCCFKDLCNHEDSPLARARL--NLTNELDSNPVSSERGANYNGEVWFKAAT 450
L C F+ L + +DS AR R+ L LDSNP + E ++ W + +T
Sbjct: 1916 LVCIFRYLQSCQDSS-ARIRILSELIGLLDSNPTNIEALMEHSWNYWLETST 1966
>02_02_0610 - 12113162-12113965
Length = 267
Score = 27.5 bits (58), Expect = 6.5
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 127 VHVSVSTWRRLLQ-RTSSSQTPLKARMSPSFD*IRRS-GAILLPDTQLGIGPPPAPAHSP 300
V+V+ +T + L+ T + PL +S F S +LLP+ G PAPA +P
Sbjct: 139 VNVTTTTGQSLVNVSTGVAAVPLGTTLSADFPLAVYSVDGVLLPEQMFGKAKAPAPAAAP 198
>01_01_0361 + 2838979-2841745,2841897-2842285
Length = 1051
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 412 ANYNGEVWFKAATIAVPVFGGLIMFLLVTV 501
A+ N + W K+ IA+P+ G +++ + TV
Sbjct: 667 ASKNNKRWHKSLKIALPITGSILLLVSATV 696
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 149 GGGCYSERP-APRHHSRHGCLHH 214
GGG ERP APR H HG H+
Sbjct: 21 GGGGGQERPKAPRRHGSHGPGHY 43
>07_01_0205 + 1481380-1481892
Length = 170
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2
Query: 89 RCYCNTAQCVSTGYMCRSPRGGGCYSERP 175
R CNT + T C GG Y+ERP
Sbjct: 141 RVACNTNNGIGTIIACNYYPGGNIYNERP 169
>04_03_0832 +
20139299-20139520,20139822-20141114,20142697-20142822,
20143322-20143442,20144213-20144481
Length = 676
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +1
Query: 238 AILLPDTQLGIGPPPAPAHSPLHCCFKDLCNHEDSPLARAR 360
A LL D P PA +H F L NH D L RAR
Sbjct: 307 AFLLFDQMPNPFPAPAAGFQGMHRSFVGLKNHLDLRLLRAR 347
>03_05_0264 -
22510997-22511012,22511641-22511709,22511783-22511931,
22512235-22512330,22512853-22512981,22513216-22513494,
22513983-22514069
Length = 274
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = +2
Query: 134 CR--SPRGGGCYSERPAPRHHSRHGCLHHLT 220
CR PR GG + APR GCL H+T
Sbjct: 48 CRRGGPRRGGAPAHLRAPRRPVSVGCLSHVT 78
>02_05_1156 - 34528204-34529411,34529982-34530122,34530214-34531072
Length = 735
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +2
Query: 44 DIGLNEAKETDRDGVRCYCNTAQCVSTGYMCRSPRG 151
D G + E +RD C+ N GY+C P G
Sbjct: 282 DGGCQDIDECERDKDACFGNKCTNTLGGYLCMCPPG 317
>01_06_1267 + 35874358-35875452
Length = 364
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 148 TWRPTHVPRANTLRSVAITPNSISIRFFGFIQSDICGLRRSIFTVCSR 5
+WR + + R +A +P S S+ G ++ D CG RRS +V R
Sbjct: 217 SWRKNPFGQIRSNRYIA-SPISNSVTLGGRLKEDECGHRRSFSSVIIR 263
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 277 PPAPAHSPLHCCFKDLCNHEDSPLARARLNLTNELDSN-PVSSE-RGANYNG 426
PP+ KDL E +P ++ L N++ N P S+E G N+NG
Sbjct: 299 PPSDMSVQTSSTLKDLVKKEGTPAKKSICILRNDVKKNLPSSAEFDGLNHNG 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,543
Number of Sequences: 37544
Number of extensions: 392698
Number of successful extensions: 1458
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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