Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20554
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.7  
SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)                    29   2.9  
SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)                  28   5.1  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  

>SB_5218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 17  SEDGSSESTDIGLNEAKETDRDGVRCYCNTAQCVST 124
           S+D  S   D G N  +     G    CNTAQC +T
Sbjct: 132 SDDDCSHQRDAGCNTTQCNTIQGNTAQCNTAQCNTT 167


>SB_42738| Best HMM Match : 7tm_1 (HMM E-Value=0.89)
          Length = 1354

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = -2

Query: 133  HVPRANTLRSVAITPNSISIRFFGFIQSDICGL 35
            H+P+   LR+ ++TP++ +  +  +++ D C +
Sbjct: 1295 HLPQTRPLRTTSLTPDATTAHYLTYLRRDHCAV 1327


>SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)
          Length = 304

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 480 YETPEHRHGDGRRFEPHFAVVVGSAFTRHRVRI 382
           Y  P H   + R F P   ++V + FT +++R+
Sbjct: 31  YSHPRHHGANLRVFHPGKTIIVATVFTHYQLRV 63


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 14  YSEDGSSESTDIGLNEAKETDRDG-VRCYCNTAQCVSTGYMCRSPRGGGCY 163
           Y++    ++   G  + K +   G V C CNTA  V+    C   R G CY
Sbjct: 532 YTQGRQCDACKPGFYDLKSSHSTGCVTCGCNTAGTVNRNASCDQSR-GQCY 581


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 307  CCFKDLCNHEDSPLA--RARLNLTNELDSNPVSSERGANY 420
            C  KDLC+H  +P +  R R++    LD      E+  N+
Sbjct: 1086 CKNKDLCDHTSAPPSNFRPRVSYVRPLDEGETEPEKPQNF 1125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,276,054
Number of Sequences: 59808
Number of extensions: 412488
Number of successful extensions: 4360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4360
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)