Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20554
(506 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81054-3|CAC70083.1| 190|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81054-2|CAB02880.3| 223|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 29 1.9
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 29 1.9
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 29 1.9
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 29 1.9
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 29 1.9
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 29 1.9
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z73102-12|CAA97406.1| 430|Caenorhabditis elegans Hypothetical p... 27 5.9
Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical p... 27 5.9
U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated p... 27 5.9
U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated p... 27 5.9
U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated p... 27 5.9
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 27 5.9
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 27 5.9
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 27 5.9
U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin pr... 27 5.9
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 27 5.9
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 27 5.9
U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 27 5.9
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 27 5.9
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical pr... 27 7.8
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 27 7.8
AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GA... 27 7.8
AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GA... 27 7.8
AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GA... 27 7.8
AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GA... 27 7.8
AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GA... 27 7.8
>Z81054-3|CAC70083.1| 190|Caenorhabditis elegans Hypothetical
protein F01D4.5b protein.
Length = 190
Score = 29.1 bits (62), Expect = 1.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 68 LWLHSIRYLWTPTIHLH 18
LW H LW P +HLH
Sbjct: 114 LWFHGSCVLWAPNVHLH 130
>Z81054-2|CAB02880.3| 223|Caenorhabditis elegans Hypothetical
protein F01D4.5a protein.
Length = 223
Score = 29.1 bits (62), Expect = 1.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -1
Query: 68 LWLHSIRYLWTPTIHLH 18
LW H LW P +HLH
Sbjct: 155 LWFHGSCVLWAPNVHLH 171
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 155 GCYSERPAPRHHSRHGCLHHLTESEEAVLSY 247
GC+ +R H H CL L ESE V+ Y
Sbjct: 100 GCFGKRTGQNHRRTHNCL-LLQESEMIVIDY 129
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 155 GCYSERPAPRHHSRHGCLHHLTESEEAVLSY 247
GC+ +R H H CL L ESE V+ Y
Sbjct: 100 GCFGKRTGQNHRRTHNCL-LLQESEMIVIDY 129
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 155 GCYSERPAPRHHSRHGCLHHLTESEEAVLSY 247
GC+ +R H H CL L ESE V+ Y
Sbjct: 100 GCFGKRTGQNHRRTHNCL-LLQESEMIVIDY 129
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 155 GCYSERPAPRHHSRHGCLHHLTESEEAVLSY 247
GC+ +R H H CL L ESE V+ Y
Sbjct: 100 GCFGKRTGQNHRRTHNCL-LLQESEMIVIDY 129
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 155 GCYSERPAPRHHSRHGCLHHLTESEEAVLSY 247
GC+ +R H H CL L ESE V+ Y
Sbjct: 100 GCFGKRTGQNHRRTHNCL-LLQESEMIVIDY 129
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 155 GCYSERPAPRHHSRHGCLHHLTESEEAVLSY 247
GC+ +R H H CL L ESE V+ Y
Sbjct: 100 GCFGKRTGQNHRRTHNCL-LLQESEMIVIDY 129
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 155 GCYSERPAPRHHSRHGCLHHLTESEEAVLSY 247
GC+ +R H H CL L ESE V+ Y
Sbjct: 100 GCFGKRTGQNHRRTHNCL-LLQESEMIVIDY 129
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/80 (28%), Positives = 32/80 (40%)
Frame = +1
Query: 166 RTSSSQTPLKARMSPSFD*IRRSGAILLPDTQLGIGPPPAPAHSPLHCCFKDLCNHEDSP 345
R SSS+ SP D S +L P T L PP +P + + E++P
Sbjct: 273 RRSSSRVSPSGGSSPISDTFIASPTLLPPSTTLSSTPPTISPSAPTLLPTRSPKSREETP 332
Query: 346 LARARLNLTNELDSNPVSSE 405
R ++ NP SSE
Sbjct: 333 TRREE----QQVPPNPSSSE 348
>Z73102-12|CAA97406.1| 430|Caenorhabditis elegans Hypothetical
protein B0035.11 protein.
Length = 430
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = +2
Query: 23 DGSSESTDIGLNEAKETDRDGVRCYCNTAQCVSTGYMCRSPRGGGCYSERPAPRHHSRHG 202
D ++ +I E + + +R + Q V + R PR G YS+ SR G
Sbjct: 317 DDVGQNPEITRRENARKEEESLRAHIRRTQMVRNNFKVRGPRYAGQYSDDEDMPTSSRKG 376
>Z70757-10|CAE18045.2| 117|Caenorhabditis elegans Hypothetical
protein ZK287.9 protein.
Length = 117
Score = 27.5 bits (58), Expect = 5.9
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 307 CCFKDLCNHEDSPLA 351
CC KD+CN +SP+A
Sbjct: 88 CCQKDMCNSVNSPMA 102
>U50071-6|AAQ91911.1| 1004|Caenorhabditis elegans Uncoordinated
protein 44, isoform g protein.
Length = 1004
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U50071-5|AAA93443.1| 2039|Caenorhabditis elegans Uncoordinated
protein 44, isoform a protein.
Length = 2039
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U50071-4|AAM75382.1| 1841|Caenorhabditis elegans Uncoordinated
protein 44, isoform e protein.
Length = 1841
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 232 SGAILLPDTQLGIGPPPAPAHSPLHC 309
+G LP Q PPPAP+ P HC
Sbjct: 112 AGPSQLPPLQSAHIPPPAPSSIPPHC 137
>U39847-3|AAB41826.1| 1815|Caenorhabditis elegans AO49 ankyrin
protein.
Length = 1815
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein.
Length = 1786
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 245 KIAPLLLIQSNDGDIRALSGVWELDVRCNSRR 150
++A LLL +S D + RAL+G L + C R
Sbjct: 373 RVAKLLLDRSADPNSRALNGFTPLHIACKKNR 404
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 232 SGAILLPDTQLGIGPPPAPAHSPLHC 309
+G LP Q PPPAP+ P HC
Sbjct: 112 AGPSQLPPLQSAHIPPPAPSSIPPHC 137
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 98 CNTAQCVSTGYMCRSPRGGGCYSERPAPRHHSRHGCLHHLTESEE 232
C+ +C+S ++C G S+ HSRHGC + +E
Sbjct: 3014 CDNLKCISRAFICDGEDDCGDGSDE-----HSRHGCGNRTCTDQE 3053
>Z50016-6|CAC42350.1| 448|Caenorhabditis elegans Hypothetical
protein T21C12.1f protein.
Length = 448
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>Z50016-5|CAC42349.1| 506|Caenorhabditis elegans Hypothetical
protein T21C12.1e protein.
Length = 506
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>Z50016-4|CAC42348.1| 475|Caenorhabditis elegans Hypothetical
protein T21C12.1d protein.
Length = 475
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>Z50016-3|CAC42347.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1c protein.
Length = 487
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>Z50016-2|CAC42346.1| 487|Caenorhabditis elegans Hypothetical
protein T21C12.1b protein.
Length = 487
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>Z50016-1|CAA90318.1| 1106|Caenorhabditis elegans Hypothetical
protein T21C12.1a protein.
Length = 1106
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 98 CNTAQCVSTGYMCRSPRGGGCYSERPAPRHHSRHGCLHHLTESEE 232
C+ +C+S ++C G S+ HSRHGC + +E
Sbjct: 3014 CDNLKCISRAFICDGEDDCGDGSDE-----HSRHGCGNRTCTDQE 3053
>AF151644-1|AAD42386.1| 448|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49C protein.
Length = 448
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>AF151643-1|AAD42385.1| 506|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.3 protein.
Length = 506
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>AF151642-1|AAD42384.1| 475|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.2 protein.
Length = 475
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>AF151641-1|AAD42383.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49B.1 protein.
Length = 487
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
>AF151640-1|AAD42382.1| 487|Caenorhabditis elegans ionotropic GABA
receptor subunitUNC-49A protein.
Length = 487
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 191 SRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
S H CLH + +E Q+L+SVLDR R T
Sbjct: 12 SAHLCLHVVVTQDEDSHINTQLLSSVLDRLTNRTT 46
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,049,900
Number of Sequences: 27780
Number of extensions: 290541
Number of successful extensions: 1029
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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