Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20554
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 138  RHMYPVLTHCA 106
            RHMY  L HCA
Sbjct: 1686 RHMYEELNHCA 1696


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 209 GDIRALSGVWELDVRCNSRRHVET 138
           G + +L G  +L +RC+   H E+
Sbjct: 58  GLVASLDGALKLRIRCSDVHHFES 81


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 290  AGAGGGPIPS*VSGNKIAPLLLIQSNDGDIRALSGV 183
            A  GGGP     +   I+P    Q ++G   +L+G+
Sbjct: 1678 ANTGGGPDKIPETAEDISPYATFQLSEGGGGSLAGL 1713


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 290  AGAGGGPIPS*VSGNKIAPLLLIQSNDGDIRALSGV 183
            A  GGGP     +   I+P    Q ++G   +L+G+
Sbjct: 1674 ANTGGGPDKIPETAEDISPYATFQLSEGGGGSLAGL 1709


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 113 CVSTGYMCRSPRG 151
           C+STG  C  PRG
Sbjct: 135 CLSTGGSCYWPRG 147


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 90  GVIATLRNVLARGTCVGLHVAA 155
           GV+     VLA  TC+G  + A
Sbjct: 567 GVVVLFAVVLAGATCLGSSIKA 588


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 97  ITPNSISIRFFGFIQSDICGLRRSIFTVC 11
           I P     + +G   SDI    R +F VC
Sbjct: 387 IHPGKDINKLYGMTPSDIDKYSRIVFPVC 415


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 97  ITPNSISIRFFGFIQSDICGLRRSIFTVC 11
           I P     + +G   SDI    R +F VC
Sbjct: 387 IHPGKDINKLYGMTPSDIDKYSRIVFPVC 415


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -2

Query: 97  ITPNSISIRFFGFIQSDICGLRRSIFTVC 11
           I P     + +G   SDI    R +F VC
Sbjct: 325 IHPGKDINKLYGMTPSDIDKYSRIVFPVC 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,890
Number of Sequences: 438
Number of extensions: 3481
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)