Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20554
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60470.1 68416.m06763 hypothetical protein contains Pfam prof... 28 3.1
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 27 5.5
At4g15010.3 68417.m02307 mitochondrial substrate carrier family ... 27 5.5
At4g15010.2 68417.m02306 mitochondrial substrate carrier family ... 27 5.5
At4g15010.1 68417.m02305 mitochondrial substrate carrier family ... 27 5.5
At3g05920.1 68416.m00668 heavy-metal-associated domain-containin... 25 5.6
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont... 27 7.3
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 27 7.3
At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putati... 27 7.3
At4g03292.1 68417.m00450 expressed protein ; expression supporte... 27 9.6
At3g55900.1 68416.m06212 F-box family protein putative protein, ... 27 9.6
At3g55210.1 68416.m06132 no apical meristem (NAM) protein-relate... 27 9.6
>At3g60470.1 68416.m06763 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 540
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +1
Query: 373 NELDSNPVSSER---GANYNGEVWFKAATIAVPVFGGLIMFLLVTVA 504
N NPV+ R G Y G +W AT+A + L+M L+ TVA
Sbjct: 488 NAYYENPVNRSRTILGRQYFGNLWRGTATVAAALL--LVMTLIQTVA 532
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 497 VTSRNIMRPPNTGTAMVAALNHT 429
VT+R IMRPP G A+ N T
Sbjct: 96 VTTRRIMRPPKKGAAVQRPRNRT 118
>At4g15010.3 68417.m02307 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 378
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 60 KPKKRIEMEFGVIATLRNVLARGTCVGLHVAAAVTAN 170
KP KR+E G+ T RN+L RG +G+ +A + A+
Sbjct: 327 KPGKRLERWTGIHPTDRNLLFRG--IGMRMARSSVAS 361
>At4g15010.2 68417.m02306 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 378
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 60 KPKKRIEMEFGVIATLRNVLARGTCVGLHVAAAVTAN 170
KP KR+E G+ T RN+L RG +G+ +A + A+
Sbjct: 327 KPGKRLERWTGIHPTDRNLLFRG--IGMRMARSSVAS 361
>At4g15010.1 68417.m02305 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 378
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 60 KPKKRIEMEFGVIATLRNVLARGTCVGLHVAAAVTAN 170
KP KR+E G+ T RN+L RG +G+ +A + A+
Sbjct: 327 KPGKRLERWTGIHPTDRNLLFRG--IGMRMARSSVAS 361
>At3g05920.1 68416.m00668 heavy-metal-associated domain-containing
protein contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 126
Score = 24.6 bits (51), Expect(2) = 5.6
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 274 PPPAPAHSPLHCCFKDLCNHED 339
PPPAP P H C CN D
Sbjct: 90 PPPAP-EPPKHVCKPPYCNSCD 110
Score = 21.4 bits (43), Expect(2) = 5.6
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1
Query: 262 LGIGPPPAPAHSP 300
+ +GPPP P P
Sbjct: 68 ISVGPPPKPPEPP 80
>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
contains weak similarity to Swiss-Prot:Q9NZW4 dentin
sialophosphoprotein precursor [Homo sapiens]
Length = 1501
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 265 GIGPPPAPAHSPLHCCFKDLCNHEDSPLARARLNLTNELDSNPVSS 402
G+GP +P+ S D CN +S A +RL L +++D +P +S
Sbjct: 756 GMGPENSPSTSASADRSVDRCNQVNS--ASSRLELLHKVDPSPENS 799
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 27.1 bits (57), Expect = 7.3
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +2
Query: 116 VSTGYMCRSPRGGGCYSERPAPRHHSRHGCLHHLTESEEAVLSYCQILNSVLDRPLLRPT 295
VSTG +S C ER P H + GC ++ E +L ++NSV D +P
Sbjct: 93 VSTG---KSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSV-DANGNQPL 148
Query: 296 LHFIAASKICAT 331
F+ S+ A+
Sbjct: 149 DVFVRVSRFVAS 160
>At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 968
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 298 PLHCCFKDLCNHEDSPLARARL 363
PL C++ LC+ DSP+A L
Sbjct: 411 PLELCYRSLCSCGDSPIADGSL 432
>At4g03292.1 68417.m00450 expressed protein ; expression supported
by MPSS
Length = 142
Score = 26.6 bits (56), Expect = 9.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -1
Query: 86 LHLDPFLWLHSIRYLWTPT 30
LH +W+H +RY+W T
Sbjct: 55 LHALQVIWIHGLRYVWFET 73
>At3g55900.1 68416.m06212 F-box family protein putative protein,
Arabidopsis thaliana ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 107
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 73 RFFGFIQSDICGLRRSIFTVCSRE 2
RF GF+ + I L + F CSR+
Sbjct: 84 RFVGFVNNVIANLSTNFFNTCSRD 107
>At3g55210.1 68416.m06132 no apical meristem (NAM) protein-related
contains Pfam PF02365 : No apical meristem (NAM)
protein; similar to NAC domain protein NAC2
(GI:21554255) {Arabidopsis thaliana}
Length = 280
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 301 LHCCFKDLCNHEDSPLARARLNLTNELDSNPVS-SERGANYNGEVWF 438
+HC K + + L ++L N +SNP + SE N + WF
Sbjct: 25 IHCYLKPYSDGNTNVLLHVPIHLVNIYESNPQTLSEEFQKGNDKEWF 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,773
Number of Sequences: 28952
Number of extensions: 277603
Number of successful extensions: 950
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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