Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20551
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    58   1e-09
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    30   0.29 
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    27   2.7  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    27   3.6  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   4.7  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   6.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   6.2  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.2  

>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 26/51 (50%), Positives = 36/51 (70%)
 Frame = +1

Query: 82  VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADN 234
           +LD++LF+ +K GNP+ IRE+Q+KR  DV +VD V+E    W  LR E DN
Sbjct: 1   MLDINLFQVEKGGNPEIIRESQRKRGADVGVVDKVIEMYKEWVSLRFELDN 51



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
 Frame = +2

Query: 509 VPVDDDEDHNLVERTDGDCGF--RKK--YSHVDLICMIDGMDGERGSAVAGGRGYYLKGP 676
           VPV  DED+N + R     G    KK   SH +++  +DG D ERG  V+G RGY+L+  
Sbjct: 116 VPVSMDEDNNEIIRKWAPEGVTVEKKNCLSHHEVLTRLDGYDPERGVKVSGHRGYFLRQY 175

Query: 677 AVFLEQALVQLSL 715
            VF   AL+Q  L
Sbjct: 176 GVFFNLALIQYGL 188


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 264 EIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIK 395
           EIG K K+K P+    E  P  I+  L +L G+N  PL + Q K
Sbjct: 16  EIGNKQKSKTPT----ERRPEGISRELYSLLGENSAPLAIYQKK 55


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 563  CGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGP 676
            CG  K+YS V ++  +DG++G     V+GG+   L  P
Sbjct: 1116 CGVIKEYSTVVVMGSLDGVEGS-DETVSGGQRLSLDRP 1152


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 360 DNLKPLTVNQIKKVRVLIDNAISKNDEG--LLAAEKARSAALREVGNHLHESYQLMMMK 530
           +  +P+T N +KK +  ++ A  K  +     AA  AR+AA +E      E+ + +++K
Sbjct: 62  EEFEPITTNALKKAKKGVEQAAKKKAKAAEAEAAAAARAAAAKEAEAKRLEAAKNIVLK 120


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 441 GLLAAEKARSAALREVGNHLHESYQLMMMKTITW*KGQTETAALEKSTLMWI*SA*LMEW 620
           G+LA E      L  +G  LH    + +  T T+ +   +     K+TL+   S  L +W
Sbjct: 286 GILADEMGMGKTLEVLGLVLHHQLPISLTDTCTFDQVVGKNVKYSKATLIITPSTILDQW 345

Query: 621 MERGD 635
           +   D
Sbjct: 346 LSEID 350


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 616 NGWREGISCSRWSWLLSKRSCSIPRTSPRSTFS 714
           N WRE I  S WS  L+ R   +   +  S FS
Sbjct: 47  NTWREAIETSAWSGKLNSRIILVFDETFESAFS 79


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = -3

Query: 137 RILSGLPSLSARNKSKS 87
           R L GLPSLS RN  KS
Sbjct: 130 RSLHGLPSLSRRNSKKS 146


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 598 DLHD*WNGWREGISCSRWSWLLSKRSCSIPRTSPRSTFSKN 720
           D +D W  W++ +   +    +SK   SI RT  +S F K+
Sbjct: 128 DPNDEWKAWQKRMRYKKNLTKISKNHHSIIRTPKKSYFPKD 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,089
Number of Sequences: 5004
Number of extensions: 53894
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)