Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20551
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 62 3e-10
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 54 9e-08
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 38 0.006
01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812 36 0.024
11_06_0371 + 22774245-22774413,22774504-22774670,22775538-227756... 29 3.7
11_08_0039 - 27884947-27885077,27885211-27886317,27886437-278866... 28 6.5
03_05_0291 - 22837412-22838128 28 6.5
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 8.6
01_02_0002 + 10059518-10059949,10060134-10060202,10060344-100604... 28 8.6
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 62.5 bits (145), Expect = 3e-10
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 509 VPVDDDEDHNLVERTDGDCGFRKKY-SHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVF 685
VPV DDE +NL+ RT G+ +HVDL M+D + E+G+ VAGGRGYYLK V
Sbjct: 116 VPVSDDEANNLIVRTWGERRLEGNLKNHVDLCKMLDIVALEKGADVAGGRGYYLKDEGVL 175
Query: 686 LEQALVQLSL 715
L AL+ L
Sbjct: 176 LNLALINFGL 185
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/50 (44%), Positives = 33/50 (66%)
Frame = +1
Query: 82 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEAD 231
+LD++LFR +K G+P+ IR +Q+ R V LVD V+ D WR+ + E D
Sbjct: 1 MLDINLFRTEKGGDPELIRRSQRNRSASVELVDEVIALDDQWRQRQFELD 50
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 54.4 bits (125), Expect = 9e-08
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +2
Query: 509 VPVDDDEDHNLVERTDGDCGFRKKY-SHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVF 685
VPV DDE +NL+ RT G+ +HVDL M+D + E+G VAGGRGYYLK
Sbjct: 116 VPVSDDEANNLIVRTWGEKRMEGNLKNHVDLCKMLDIVALEKGVDVAGGRGYYLKDEGDG 175
Query: 686 LEQALVQLS 712
E+ L+ S
Sbjct: 176 EEKYLIATS 184
Score = 51.2 bits (117), Expect = 8e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +1
Query: 82 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEAD 231
+LD++LFR +K G+P+ IR++Q+ R V LVD V+ D WR+ + E D
Sbjct: 1 MLDINLFRTEKGGDPELIRKSQRNRSASVELVDEVIALDDQWRQRQFELD 50
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 38.3 bits (85), Expect = 0.006
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 258 SKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRV-LIDNAISKN 434
SK G KN++ + + + VPS+++N LVN G+N P T++ K++ V +I+ S
Sbjct: 44 SKREGAGGKNEQYNLEDVDSVPSKMSNKLVN--GNNKVPATLDDYKRLLVPVIEEYFSTG 101
Query: 435 DEGLLAAEKARSAALREVGNHLHESY 512
D L A+E LR +G+ SY
Sbjct: 102 DVELAASE------LRSLGSDQFHSY 121
>01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812
Length = 376
Score = 36.3 bits (80), Expect = 0.024
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +3
Query: 282 KNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEK 461
KN EP P + NNL + D+L +N + V++L+D A + D+ K
Sbjct: 185 KNTEPRQKRKNPRTAMEVNNLADELLDSLGVYLINNVDDVKILLDAARADLDDNAAHLAK 244
Query: 462 ARSAALREVGNHLHE 506
AR A LR V + E
Sbjct: 245 AR-ARLRNVRRLVRE 258
>11_06_0371 +
22774245-22774413,22774504-22774670,22775538-22775631,
22775723-22775871,22775950-22776042,22776167-22776235,
22776236-22776415,22776465-22776518,22776739-22776905,
22777180-22777314,22777386-22777479,22777567-22777848
Length = 550
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 641 VAGGRGYYLKGPAVFLEQALVQLSL 715
V+G + YYLK AV LE ALV ++
Sbjct: 248 VSGSKFYYLKNEAVLLEMALVNWAI 272
>11_08_0039 -
27884947-27885077,27885211-27886317,27886437-27886681,
27886810-27886961,27887077-27887193
Length = 583
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 300 GSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVL 410
G ++ P+ A VNLTGDN +P KV+VL
Sbjct: 430 GVYEDDFPNNPAPVFVNLTGDNDRPGVTKHGAKVKVL 466
>03_05_0291 - 22837412-22838128
Length = 238
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 602 CMIDGMDGERGSAVAGGRGYYLKGPAVFLEQALVQLSL 715
C +G G G A GRG+ L PAV L + + L
Sbjct: 176 CHYEGPIGSGGGAAVAGRGFDLNLPAVALPDIMTERCL 213
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -2
Query: 192 LDDCIHKGNIFKSLLLIFSNFIWITVFIG 106
L++C+ + N F L L+ ++ +W+ + IG
Sbjct: 187 LNNCVGRKNYFTFLALMITSLLWLAIEIG 215
>01_02_0002 +
10059518-10059949,10060134-10060202,10060344-10060426,
10061842-10061894,10062056-10062177,10062354-10062387,
10062472-10062632,10062879-10062956,10063038-10063178
Length = 390
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 518 DDDEDHNLVERTDGDCGF 571
DDD+D +L+ DCGF
Sbjct: 259 DDDDDESLIPNAKNDCGF 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,895,604
Number of Sequences: 37544
Number of extensions: 353176
Number of successful extensions: 1057
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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