Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20551
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   1e-21
SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)           80   2e-15
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   33   0.18 
SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)            31   1.2  
SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6)             31   1.2  
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_58865| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-13)       29   5.0  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   6.6  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               28   8.8  
SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_15871| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/71 (63%), Positives = 55/71 (77%)
 Frame = +2

Query: 509 VPVDDDEDHNLVERTDGDCGFRKKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGPAVFL 688
           V + +DED N V+R  GDC  RKKYSHVDL+ M+DG+D +RGS VAG RGY+LKGP VFL
Sbjct: 158 VRISNDEDENPVDRIVGDCSVRKKYSHVDLVHMVDGVDIDRGSVVAGSRGYFLKGPLVFL 217

Query: 689 EQALVQLSLRM 721
           E AL+Q + RM
Sbjct: 218 EHALIQHATRM 228



 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 37/84 (44%), Positives = 54/84 (64%)
 Frame = +3

Query: 267 IGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGL 446
           + LK   KEP G +DE +P E+ + L  LT + L+ LTV QIK VR L+D+ ++K +E +
Sbjct: 78  VTLKNMKKEPVG-DDETLPKEVLDGLEELTAEMLQQLTVTQIKIVRTLVDDGMAKCNEEV 136

Query: 447 LAAEKARSAALREVGNHLHESYQL 518
              EK R+  L EVGN LH+S ++
Sbjct: 137 ARLEKLRNEKLFEVGNILHDSVRI 160


>SB_31390| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.0011)
          Length = 103

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 36/45 (80%), Positives = 38/45 (84%)
 Frame = +1

Query: 79  MVLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRK 213
           MVLDLDL+RADK GNPDKIRENQ KR+ DV LVD VVE DT WRK
Sbjct: 40  MVLDLDLYRADKGGNPDKIRENQSKRYSDVTLVDKVVEADTQWRK 84


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 246 EECCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDN 365
           +ECC+++IG ++   E  GS+D+  P     NLV+ T  N
Sbjct: 84  KECCAEDIGFEVVPGEELGSDDQVFPRHDNENLVSKTITN 123


>SB_50259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 713

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +3

Query: 312 EPVPSEIANNLVNLTGDNLKPL-----TVNQIKKVRVLIDNAISKNDEGLLAAEKARSAA 476
           E VP    NN+ +LTG +L  L     TV+Q+  ++ +      K+      A+   +  
Sbjct: 608 ESVPIPPTNNIASLTGAHLNQLIDITATVSQLSTIKTMDTRLGEKDKVECYLADPTSAIK 667

Query: 477 LREVGNHLHE 506
           L+  G+H HE
Sbjct: 668 LKAWGDHAHE 677


>SB_52646| Best HMM Match : Transposase_21 (HMM E-Value=2.9)
          Length = 257

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 232 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 101
           C++   ++  +C  RR    GQHL ++ S+   +Y D R+ YRH+
Sbjct: 180 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 224


>SB_4904| Best HMM Match : Transposase_21 (HMM E-Value=3.6)
          Length = 223

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 232 CQLRGAISSTRCLARRLHPQGQHL*ISSSDFLEFYLDYRL-YRHE 101
           C++   ++  +C  RR    GQHL ++ S+   +Y D R+ YRH+
Sbjct: 146 CEVGKLLNQGKCACRRCKLVGQHLPMNESNNHMYYGDNRIHYRHK 190


>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 348 NLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHLH 503
           N T D   P T+N I    +L   A++K+DEG    +    A   E   +L+
Sbjct: 551 NDTADQTVPSTLNYIINGGILTIKAVTKSDEGTFVCKGTNPAGAAEASANLY 602


>SB_58865| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=8.2e-13)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 595 IHMRVLFSKAAVSVCPFYQVMVFIIINWYD 506
           IH R    KA   VC    V+VF+II +YD
Sbjct: 2   IHRRFSKLKALFFVCAANLVLVFVIITYYD 31


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 29/115 (25%), Positives = 51/115 (44%)
 Frame = +3

Query: 186  RRARHLVEEIAPRS*QFQ*TEECCSKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDN 365
            R+A   +EE A  + + +  E   SKE G K+K+ E SG + E   +      +N   + 
Sbjct: 1758 RKANENLEEYAADNDRLE-RELAKSKEDGAKLKDLEDSGKQPENDETRALQETINELENK 1816

Query: 366  LKPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHLHESYQLMMMK 530
            +K   ++  K+       A+SK ++ L    K     L++    L E  +L+  K
Sbjct: 1817 IKESEIS--KEDMDKAKEALSKENKEL----KGTVEQLQDAHEKLSEENRLLKRK 1865


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 94  DLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWR 210
           DLF  D +  PD++     + F DV   +A + +  LWR
Sbjct: 38  DLFEGDIELTPDEVSLLSSQTFDDVTKRNAHLHRQGLWR 76


>SB_10831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 382 TVRGFK-LSPVRFTRLLAISEGTGSSSEPLGSLF 284
           TV G K L+PV   R L +S+GTG ++  + +LF
Sbjct: 370 TVIGLKHLNPVLIQRRLWVSKGTGKNARGIQNLF 403


>SB_23496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 504

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/56 (30%), Positives = 21/56 (37%)
 Frame = +3

Query: 411 IDNAISKNDEGLLAAEKARSAALREVGNHLHESYQLMMMKTITW*KGQTETAALEK 578
           + +    NDE    AEK R A   E     +  YQ    K + W     E  AL K
Sbjct: 285 VSHGFLSNDESPALAEKERHAKALEKYQRDYGRYQQRRQKVLDWQAQSRERGALAK 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,225,105
Number of Sequences: 59808
Number of extensions: 397519
Number of successful extensions: 1186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)