Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20551
(721 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA li... 58 4e-09
At4g09960.2 68417.m01630 MADS-box protein (AGL11) 30 1.3
At4g09960.1 68417.m01629 MADS-box protein (AGL11) 30 1.3
At1g23170.1 68414.m02895 expressed protein Location of ESTs gb|A... 29 2.3
At1g19990.1 68414.m02504 expressed protein ; expression supporte... 29 3.1
At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote... 28 5.4
At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family pr... 28 5.4
At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family pr... 28 5.4
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 27 9.5
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi... 27 9.5
At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (CO... 27 9.5
At4g37050.1 68417.m05247 patatin, putative similar to patatin-li... 27 9.5
>At5g27470.1 68418.m03281 seryl-tRNA synthetase / serine--tRNA
ligase identical to SP|Q39230 Seryl-tRNA synthetase (EC
6.1.1.11) (Serine--tRNA ligase) (SerRS) {Arabidopsis
thaliana}
Length = 451
Score = 58.4 bits (135), Expect = 4e-09
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Frame = +2
Query: 509 VPVDDDEDHNLVERTDGDCGFR----KKYSHVDLICMIDGMDGERGSAVAGGRGYYLKGP 676
VPVD DE +NLV + G+ F K +HVDL+ ++ D +RG+ +AG RG++LKG
Sbjct: 116 VPVDKDEANNLVIKLWGEKRFSTPGLKLKNHVDLVELLGIADTKRGAEIAGARGFFLKGD 175
Query: 677 AVFLEQALVQLSL 715
+ L QAL+ L
Sbjct: 176 GLMLNQALINFGL 188
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/52 (44%), Positives = 38/52 (73%)
Frame = +1
Query: 82 VLDLDLFRADKDGNPDKIRENQKKRFKDVALVDAVVEQDTLWRKLRHEADNF 237
+LD++LFR +K NP+ IRE+Q++RF V +VD +++ D WR+ + E D+F
Sbjct: 1 MLDINLFREEKGNNPEIIRESQRRRFASVEIVDEIIKLDKEWRQRQFEVDSF 52
>At4g09960.2 68417.m01630 MADS-box protein (AGL11)
Length = 216
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 330 IANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISK 431
I N+ NL GD+L L+V ++K+V ++ AIS+
Sbjct: 104 IQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137
>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
Length = 230
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 330 IANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISK 431
I N+ NL GD+L L+V ++K+V ++ AIS+
Sbjct: 104 IQNSNRNLMGDSLSSLSVKELKQVENRLEKAISR 137
>At1g23170.1 68414.m02895 expressed protein Location of ESTs
gb|AA395014, gb|T23026, gb|N65311 and gb|N37226;
expression supported by MPSS
Length = 569
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 300 GSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVLIDNAISKNDEGLLAA 455
G + + SEIA NL + +K V ++KK +V + A +K D LAA
Sbjct: 112 GYDFDDSDSEIAVGKENLKAEEVKKPKVKKVKKPKVTLAEAAAKIDVSNLAA 163
>At1g19990.1 68414.m02504 expressed protein ; expression supported
by MPSS
Length = 251
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 279 MKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVR 404
+K KE +DE P N+ V ++ +N KP ++KK R
Sbjct: 69 VKKKEEIDKDDEKKPVSKRNSSVGVSKENKKPEKEEEVKKKR 110
>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 - Oryza sativa,
PIR:A57676
Length = 1010
Score = 28.3 bits (60), Expect = 5.4
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Frame = +3
Query: 255 CSKEIGLKMKNKEPSGSEDEPVPSEIAN--NLV--NLTGDNLKPLTVNQIKKVRVLIDNA 422
CS+ + L++ + GS VPSE+ + NLV NL G+N++ + + +L A
Sbjct: 137 CSRLLNLRLDSNRLGGS----VPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLA 192
Query: 423 ISKND-EGLLAAEKAR 467
+S N+ EG + ++ A+
Sbjct: 193 LSHNNLEGEIPSDVAQ 208
>At2g20180.2 68415.m02360 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 478
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 620 DGERGSAVAGGRGYYLKGPAVFLEQALVQLS 712
DG SAVAGG Y KG AV + ++++
Sbjct: 198 DGTDSSAVAGGGAYNRKGKAVAMTAPAIEIT 228
>At2g20180.1 68415.m02359 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 407
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 620 DGERGSAVAGGRGYYLKGPAVFLEQALVQLS 712
DG SAVAGG Y KG AV + ++++
Sbjct: 127 DGTDSSAVAGGGAYNRKGKAVAMTAPAIEIT 157
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 369 KPLTVNQIKKVRVLIDNAISKNDEGLLAAEKARSAALREVGNHL 500
K L V+ KVR+L N + + +G+ SA+L G H+
Sbjct: 475 KVLVVSADSKVRILQGNNVVRKYKGVCKTRSLTSASLTSDGKHI 518
>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
similarity to SP|Q01831 DNA-repair protein complementing
XP-C cells (Xeroderma pigmentosum group C complementing
protein) {Homo sapiens}; contains Pfam profile PF03835:
DNA repair protein Rad4
Length = 865
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +3
Query: 258 SKEIGLKMKNKEPSGSEDEPVPSEIANNLVNLTGDNLKPLTVNQIKKVRVL--IDNAISK 431
S E G+ +K+ D +IA L + T DN + VN KKVR + I N+ S
Sbjct: 331 SCEAGMSIKSDGTRRKGDVEFERQIAMAL-SATADNQQSSQVNNTKKVREITKISNSSSV 389
Query: 432 NDEGLLAA 455
+D+ + A
Sbjct: 390 SDQVISTA 397
>At5g15850.1 68418.m01854 zinc finger protein CONSTANS-LIKE 1 (COL1)
identical to Zinc finger protein CONSTANS-LIKE 1
SP:O50055 from [Arabidopsis thaliana]
Length = 355
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +2
Query: 146 RRRDLKMLPLWMQSSSKTPCGGNCATKLTISIN*RML*QRNWFENEEQGTQWL 304
R + + +LP+ S S T +C T +T N +L Q E+E + WL
Sbjct: 91 RHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWL 143
>At4g37050.1 68417.m05247 patatin, putative similar to patatin-like
latex allergen [Hevea brasiliensis][PMID:10589016];
contains patatin domain PF01734
Length = 339
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -1
Query: 364 LSPVRFTRLLAISEGTGS 311
+SP+ FTR L IS GTGS
Sbjct: 180 ISPLDFTRFLVISIGTGS 197
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,789
Number of Sequences: 28952
Number of extensions: 287973
Number of successful extensions: 773
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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