Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20549
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    35   0.013
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.5  

>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +2

Query: 125 HSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPSCSSL 268
           +S F +SL +R + +      D +  L +YGE LY NLI+ +    SL
Sbjct: 35  YSTFLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSL 82



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 525 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVK 638
           P+L++G G  +   N    PIL  + T+Y YN K++ +
Sbjct: 166 PILYKGIGHYLGP-NPQTQPILRGNPTSYIYNTKTEAE 202


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 338  LPAIRRFPPSSMNLVMASLSTCPPNSST 255
            +P++ + PPSS+    A  ST PP+ S+
Sbjct: 1498 IPSVAQQPPSSVAPATAPSSTLPPSQSS 1525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,573
Number of Sequences: 5004
Number of extensions: 58399
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)