Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20549
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591... 74 1e-13
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 31 1.2
03_02_0955 - 12690405-12690842,12690940-12691130,12691208-126917... 30 2.1
02_02_0574 - 11701359-11701460,11701469-11701570,11701725-117019... 29 3.7
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 29 4.9
09_04_0286 + 16400695-16401369,16401473-16401658,16402115-164025... 28 6.4
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872... 28 6.4
01_01_0977 - 7717808-7717837,7718227-7718327,7718449-7718548,771... 28 8.5
>07_01_0771 +
5917550-5917829,5918390-5918526,5918617-5918742,
5919168-5919221,5919344-5919457,5919895-5919950,
5920017-5920058,5920580-5920655,5920765-5920836,
5920908-5921033,5921117-5921221,5921333-5921416,
5921636-5921683
Length = 439
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/56 (57%), Positives = 43/56 (76%)
Frame = +2
Query: 89 LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAPS 256
LVL+D+L ++ +HS FF SLQ RG+ L F+LADD L L +YG+YLY L++FAPS
Sbjct: 36 LVLVDDLAVRSSHSAFFASLQGRGFDLDFRLADDPKLSLHRYGQYLYDGLVLFAPS 91
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +1
Query: 265 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEE-SAAVIDHFNYDVT 441
FGG VD +I +FID D+ R IA+ECG + DE+ A VIDH NY T
Sbjct: 95 FGGSVDQNSILEFIDAGHDMILAADSSASDLIRGIATECGVDFDEDPEAMVIDHINYAAT 154
Query: 442 D-EGDHTRIVVSPKNLIKAPTIVENR 516
D EGDHT +++ +LI++ I+ ++
Sbjct: 155 DAEGDHT--LIAGDDLIQSDVILGSK 178
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/41 (53%), Positives = 28/41 (68%)
Frame = +3
Query: 525 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEYP 647
P+LF G G V+ NSLVL +LSA +AYS NPKS++ P
Sbjct: 183 PVLFRGIGHAVNPSNSLVLKVLSASPSAYSANPKSKLASPP 223
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = -2
Query: 407 ADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTKVRIL*DSC 228
AD S+++N + A+ P P S+ + + PP R++ SC
Sbjct: 524 ADRSNVNNSDATALHTQERPVHTPETTNEIDPKSV--ITSEKENRPPTKQRLRRLIIRSC 581
Query: 227 INILRILTGQDLHH 186
NIL L HH
Sbjct: 582 NNILSWLKNHHRHH 595
>03_02_0955 -
12690405-12690842,12690940-12691130,12691208-12691718,
12692240-12693171,12693260-12693351,12693430-12693509,
12693568-12693621,12693734-12693850,12693949-12694194,
12694273-12694432,12694512-12694576,12694686-12694877,
12694980-12695061,12695153-12695925
Length = 1310
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 383 PHSEAISLYTS--PAAALPAIRRFPPSSMNLVMASLS-TCPPN 264
P +E++ S P+AA P ++ PP ++ V++SLS PPN
Sbjct: 23 PTAESVLRVASRDPSAAAPLLQALPPDGLDDVLSSLSPASPPN 65
>02_02_0574 -
11701359-11701460,11701469-11701570,11701725-11701922,
11702090-11704052,11705312-11706126
Length = 1059
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +1
Query: 505 VENRIHSLCYLKALDLLWTRITAWFCLFYQLIRLPT----VTTLRVR*KSTPCSWP*DST 672
+ + I YL +D +W + +AW C+ LI +TT RV +TPCS D T
Sbjct: 264 IRDEIKEKRYLIVIDDIWEK-SAWECIECALIENDRGSRIITTSRVLDAATPCSSEVDHT 322
>08_02_0749 - 20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 4 WLENQNENHNNFRDIDHFFNACLRGS*NFSSNR*LKYQRNAFTI 135
W+EN N + +R ++N L G N + K Q N F +
Sbjct: 1065 WVENSNNSRTTWRKSPDYYNYGLPGPRNAAEAAVAKMQSNGFVV 1108
>09_04_0286 +
16400695-16401369,16401473-16401658,16402115-16402575,
16402678-16402836,16402914-16403265,16403360-16403653
Length = 708
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 371 AISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSS 258
AISLYTSP F PSS ST PP++S
Sbjct: 5 AISLYTSPPPGAVYSSEFDPSSRG-SSPPCSTAPPSTS 41
>02_05_1305 -
35586499-35586601,35586963-35587034,35587111-35587232,
35587767-35587826,35587919-35587997,35588219-35588307,
35588405-35588492,35591761-35591821,35592546-35592890,
35593094-35594351
Length = 758
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/76 (25%), Positives = 31/76 (40%)
Frame = -2
Query: 410 AADSSSISNPHSEAISLYTSPAAALPAIRRFPPSSMNLVMASLSTCPPNSSTKVRIL*DS 231
A S+++ PH+ L SP+ + R P + S PP+ D+
Sbjct: 14 AVIKSTLTQPHNHHHLLAASPSLLAAVLHRLSPLPSTALAFFRSLPPPHPL-------DA 66
Query: 230 CINILRILTGQDLHHP 183
+ +LR+L HHP
Sbjct: 67 SLALLRLLAPHPRHHP 82
>01_01_0977 -
7717808-7717837,7718227-7718327,7718449-7718548,
7718706-7718822,7718913-7718990,7719980-7720058,
7720184-7720249,7720373-7720441,7720890-7721188
Length = 312
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 390 LKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGYGLTVYLSTKLEHE 253
LK F FSI V G +T+ + + G + Y+ K+E E
Sbjct: 256 LKRVFVIGFSIIVFGNRITTQTGIGTCIAIAGVAIYSYIKAKIEEE 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,292,668
Number of Sequences: 37544
Number of extensions: 368350
Number of successful extensions: 1100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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