Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20549
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)                   88   8e-18
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   30   1.6  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)           29   5.0  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               29   5.0  
SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_1970| Best HMM Match : DDOST_48kD (HMM E-Value=0)
          Length = 415

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 39/61 (63%), Positives = 48/61 (78%)
 Frame = +2

Query: 74  ADHETLVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAP 253
           A   TLVL+DN N KETHS FF SL+ +GY LTF+ ADDA+L L KYGE+LY NL++F+P
Sbjct: 26  AGQRTLVLLDNANTKETHSIFFSSLKAKGYELTFRTADDASLALVKYGEFLYDNLVIFSP 85

Query: 254 S 256
           S
Sbjct: 86  S 86



 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 41/97 (42%), Positives = 52/97 (53%)
 Frame = +1

Query: 256 VLEFGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYD 435
           V EFGG ++  AIT FID              D  RE+ SECG E DEE  AVIDH ++D
Sbjct: 87  VEEFGGSLNVRAITDFIDGGGNVLVAASSAIGDPLRELGSECGVEFDEEKTAVIDHISHD 146

Query: 436 VTDEGDHTRIVVSPKNLIKAPTIVENRIHSLCYLKAL 546
           V+D   HT +V  P N+IKA T+    + S    K +
Sbjct: 147 VSDLDQHTLVVAEPSNVIKADTVTGKTVTSPLLFKGV 183


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 442 DEGDHTRIVVSPKNLIKAPTIVENRIHSLC 531
           D+GD    V+SP++L+K+P + ++ +  LC
Sbjct: 632 DDGDDPMYVISPEDLLKSPDMCKSFLSFLC 661


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = -1

Query: 471  YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 292
            Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 860  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPSVIAWLKARRSHSRF-Y 910

Query: 291  GLTVYLSTKLEHEGANTMRFLYKYSPYFD 205
            G  +Y ++++  +  +      KY PYF+
Sbjct: 911  GGDIYTNSEISRDPCSPWGISKKYYPYFE 939


>SB_5014| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-07)
          Length = 194

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = -1

Query: 471 YYNASVVSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSGRGVTSHKKVSAIVYEFGY 292
           Y N  + +++SH+    + DCC  L        +D  +Y+    V +  K       F Y
Sbjct: 10  YLNLIIKTMMSHLWASSL-DCCYILK-------ADDDVYIRVPRVIAWLKARRSHSRF-Y 60

Query: 291 GLTVYLSTKLEHEGANTMRFLYKYSPYFD 205
           G  +Y ++++  +  +      KY PYF+
Sbjct: 61  GGDIYTNSEISRDPCSPWGISKKYYPYFE 89


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 413 TAADSSSISNPHSEAISLYTSPAAALP 333
           TA   S+I++PH+  +S  T+PAA  P
Sbjct: 476 TAQTRSAITSPHAYTVSSVTAPAATSP 502


>SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/69 (23%), Positives = 31/69 (44%)
 Frame = +3

Query: 465 CSIT*EPNQGSHNCREQNTQPLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKSQVKEY 644
           C +T      ++ C   +      E +GL+ DKD   V+ + + D+ A S +    VK  
Sbjct: 468 CGVTGTCANPAYRCNCSSNDGTWREDSGLLTDKDTLPVIQLRAGDTDAIS-SQTCSVKSA 526

Query: 645 PMQLAVRQY 671
           P +   +++
Sbjct: 527 PKERPTKKF 535


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,481,887
Number of Sequences: 59808
Number of extensions: 435176
Number of successful extensions: 1179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)