Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20549
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...    73   3e-13
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical pr...    31   0.82 
AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.     31   0.82 
Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     30   1.4  
AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.     30   1.4  
AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.     30   1.4  
AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell...    29   4.4  
Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 39/93 (41%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
 Frame = +1

Query: 265 FGGQVDSEAITKFIDDXXXXXXXXXXXXXDVYREIASECGFEMDEESAAVIDHFNYDVT- 441
           FGG +    I+KF+D              D  REIA+E GFE +E   +VIDH NYD T 
Sbjct: 83  FGGSLSPSEISKFVDAGGNVLVAAGSNIGDALREIAAEHGFEFEEAGTSVIDHHNYDQTL 142

Query: 442 DEGDHTRIVVSPKNLIKAPTIVEN--RIHSLCY 534
           D GDHT +VV    LI A  IV N  ++H + +
Sbjct: 143 DSGDHTTLVVGKDQLISAELIVGNSAKLHPVLF 175



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 24/55 (43%), Positives = 38/55 (69%)
 Frame = +2

Query: 89  LVLIDNLNIKETHSQFFKSLQERGYGLTFKLADDANLVLSKYGEYLYKNLIVFAP 253
           LVL +   +K+THS F  S++ERG+ LT + ADD+ L L K+G+ ++ +L + AP
Sbjct: 24  LVLGETAAVKDTHSVFLNSVKERGHELTVRAADDSQLALFKHGQLIFDHLFILAP 78



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +3

Query: 525 PLLFEGTGLIVDKDNSLVLPILSADSTAYSYNPKS 629
           P+LF+G GL+  K N+L L I+ A  TAYSY+PK+
Sbjct: 172 PVLFKGIGLVAGKTNNLALSIVRASGTAYSYDPKA 206



 Score = 34.3 bits (75), Expect = 0.088
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = +2

Query: 644 PHAVGRKTVLIAALQARNNARIVF 715
           P   G +T+L+  LQ+RNNARIVF
Sbjct: 212 PSIAGSRTLLVGGLQSRNNARIVF 235


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -2

Query: 449 PSSVTS*LKWSMTAADSSSISNPHSEAISLYTSPAAALPAIRRFP-PSSMNLVMASLSTC 273
           PS   S    SMT   S S ++  S  +S   +PA + P I  +  PSS N    S++T 
Sbjct: 486 PSYAFSTTTSSMTTTASDSTTSDSSVIVSSSKNPAVSNPFITTYSLPSSPNNPFISITTT 545

Query: 272 PPNSSTK 252
           P ++S++
Sbjct: 546 PDSASSQ 552


>Z83125-1|CAB05620.2|  420|Caenorhabditis elegans Hypothetical
           protein T15D6.2 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 441 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 346
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>AY037795-1|AAK94760.1|  420|Caenorhabditis elegans GLY-16 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -1

Query: 441 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 346
           S+ I+  VYDC +FL HLKS +   +  Y+SG
Sbjct: 164 SYEIINSVYDCLKFLSHLKSNW--KYFQYLSG 193


>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 453 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 346
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>Z71262-9|CAA95817.2|  440|Caenorhabditis elegans Hypothetical
           protein F22D6.11 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 441 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 346
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 184 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 213


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 453 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 346
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 177 ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 210


>AY037799-1|AAK94764.1|  352|Caenorhabditis elegans GLY-19 protein.
          Length = 352

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -1

Query: 453 VSLISHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 346
           +S  SH I++ VYDC  FL HL++ +   +  Y+SG
Sbjct: 93  ISWGSHEIIDSVYDCLEFLSHLETDW--RYFQYLSG 126


>AY037797-1|AAK94762.1|  412|Caenorhabditis elegans GLY-18 protein.
          Length = 412

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 441 SHIIVEVVYDCCRFLVHLKSTF*SDFSIYVSG 346
           SH I+   YDC  FL HLKS +   +  Y+SG
Sbjct: 156 SHEIINSAYDCLEFLSHLKSDW--RYFQYLSG 185


>AC024201-2|AAK82924.1|  556|Caenorhabditis elegans Abnormal cell
           lineage protein 17,isoform b protein.
          Length = 556

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 163 WLNFQTCG*CKSCPVKIR 216
           W NF  CG C S PVK++
Sbjct: 502 WKNFIFCGMCSSAPVKVK 519


>Z81564-1|CAB04567.1|  284|Caenorhabditis elegans Hypothetical
           protein K05C4.1 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 469 VSPKNLIKAPTIVENRIHSLCYLKALDLLWTRITAWFCLFYQLIRLPTVT 618
           +S K+++K   I +  + ++    A    WTRI A +C  Y+L    ++T
Sbjct: 97  ISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKTSIT 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,220
Number of Sequences: 27780
Number of extensions: 329977
Number of successful extensions: 1010
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)