Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20548
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 106 3e-24
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 60 4e-10
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 48 1e-06
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 41 2e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 37 0.002
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.21
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.38
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.87
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 3.5
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 4.6
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 26 4.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.1
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 8.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 8.1
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 8.1
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 106 bits (255), Expect = 3e-24
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Frame = +2
Query: 257 AAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFAN 433
AAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN AN
Sbjct: 38 AAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTAN 97
Query: 434 VIRYFPTQALNFAFKDKYKQVF 499
V+RYFPTQALNFAFKDK+K++F
Sbjct: 98 VLRYFPTQALNFAFKDKFKKMF 119
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = +1
Query: 580 SLCFV*PLDFARTRLAADV--GKGDGQREFSGLGNCISKIFKSDG 708
SL FV LD+ARTRLA D K G+R+F+GL + K ++SDG
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDG 190
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +2
Query: 260 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 439
A S V ++ + L S + ++++ G+VD + + + GL +RG +V+
Sbjct: 144 AASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVV 203
Query: 440 RYFPTQALNFAFKDKYKQVFLGG 508
+ L F D K V L G
Sbjct: 204 GIVVYRGLYFGMYDTLKPVVLVG 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/79 (39%), Positives = 48/79 (60%)
Frame = +2
Query: 257 AAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N
Sbjct: 31 ATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNC 83
Query: 437 IRYFPTQALNFAFKDKYKQ 493
+R FP A+ FA + KQ
Sbjct: 84 LRAFPYGAVQFATFNMLKQ 102
Score = 32.3 bits (70), Expect = 0.070
Identities = 16/73 (21%), Positives = 33/73 (45%)
Frame = +2
Query: 251 YPAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 430
+ + +T P + ++ QV + YK I A I K +G+ F+RG +
Sbjct: 235 FTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSS 291
Query: 431 NVIRYFPTQALNF 469
N+++ P ++ +
Sbjct: 292 NMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +2
Query: 263 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 442
V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 443 YFPTQALNFAFKDKYKQVFL 502
FP + F ++ ++V +
Sbjct: 89 VFPYAGIKFVAYEQVRRVLI 108
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Frame = +2
Query: 251 YPAAVSKTAVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRG 421
+P + AVA I V L L V Q++ + Y G D +I K +G +RG
Sbjct: 8 FPVTFAAGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRG 67
Query: 422 NFANVIRYFPTQALNFAFKDKYKQVFLGGLTRRRSSGVTSLV 547
++ P +AL FA D Y +++ R+ SS S++
Sbjct: 68 ILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 33.1 bits (72), Expect = 0.040
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 598 PLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDG 708
PLD +TR+ VGK D ++G +C+ KI K++G
Sbjct: 28 PLDVVKTRMQLSVGKSD----YNGTFDCLKKIVKNEG 60
Score = 31.5 bits (68), Expect = 0.12
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +2
Query: 278 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 454
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 455 QALNFAFKDKYK 490
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +2
Query: 272 TAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 451
T V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407
Query: 452 TQALNFAFKDKYKQ 493
+ A+++ + K+
Sbjct: 408 SVAISYLVYENCKK 421
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 260 AVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANV 436
+V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG +
Sbjct: 240 SVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGI 295
Query: 437 IRYFPTQALNFAFKDKYKQVFLGGLTRR 520
+ FP A + + K+ ++G L R
Sbjct: 296 LGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 284 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 463
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 464 NFAFKDKYKQV 496
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 326 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 469
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.87
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 338 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 436
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 27.5 bits (58), Expect = 2.0
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +2
Query: 266 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 436
S VAP++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 437 IRYFPTQALNFAFKDKYKQVFLGGLTRRRSS 529
+ Y P+ ++ F +K K +F G+ ++ +S
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF--GVNKKYTS 107
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -2
Query: 658 HAGHLPYRHRRRDGYVRSRGVTRSTERWLRRHHRRPDYQRS 536
H P R R RD RS +RS R HR DY RS
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 581 LCASCNPSTSHVPVSPPMSVREMASVNSPV-SETASARSSSP 703
L +S + ST HV V P +EM ++SPV + AS + SP
Sbjct: 39 LTSSTHSSTDHVNVLPISQDKEM-DISSPVKKQKASYSNKSP 79
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 469 RLQGQVQAGVPRRLDKKTQFWRYFXXXXXXXXXXXXTSLCF--V*PLDFART 618
RLQ Q A +P + + +FWR F TS+ F P DFA T
Sbjct: 7 RLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVT 58
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 596 NPSTSHVPVSPPMSVREMASVNSPVSETASARSSSP 703
N +T P PP S ++ P S +++ SSSP
Sbjct: 296 NSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 331
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 596 NPSTSHVPVSPPMSVREMASVNSPVSETASARSSSP 703
N +T P PP S ++ P S +++ SSSP
Sbjct: 350 NSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSP 385
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 74 YEITPNLLFKNQELVFRDPPSACAATPTSTY 166
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 378 TKASTIPL*RWSAAICLLTCCTWSSSLTRSIGATAV 271
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +2
Query: 362 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 454
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 590 SCNPSTSHVPVSPPMSVREMASVNSPVSETASARSSSPTV 709
S PS P PP V+ +A+ N PVS S S P+V
Sbjct: 383 SSKPSPLFPP--PPPRVKSLAT-NKPVSMPVSTEQSDPSV 419
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 599 PSTSHVPVSPPMSVREMASVNSPVSETASARSS 697
P+ S+VPV MS+R+ S + + + A A++S
Sbjct: 302 PTNSNVPVGNSMSIRDTDSPLNILVDKAKAKAS 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,631
Number of Sequences: 5004
Number of extensions: 54882
Number of successful extensions: 214
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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