Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20547
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    31   0.21 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   1.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   1.9  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.5  
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    26   4.4  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         26   4.4  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   5.9  

>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 325 RRHLAQVAAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRKTK 462
           R+ L+   ++ PS    + SP      PQI   T T+ SNGT + +
Sbjct: 107 RKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTETSNGTSRRR 152


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 340 QVAAAPPSEETARPSPYAQHHPP 408
           QV  APP   T  P+P  +HHPP
Sbjct: 726 QVTPAPP---TPAPTPAVKHHPP 745


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 289 PAVGQFDAEG-P*RRHLAQ--VAAAPPSEETARPSPYAQHHPP 408
           PA+G   A G P  RH+ +   +AAPPS   A P+P ++  PP
Sbjct: 99  PALGGLFAGGMPKLRHIGKSSASAAPPSAP-APPTPQSELRPP 140


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 225  LEIFLFLGMKGTRSWSFERYICISAFSPSRCRCTRPLAIAGTEAPVAHTAVIA 67
            L  FL  G +G    ++   ICI      +C+   P+ +AG E  +   A IA
Sbjct: 1297 LHEFLVQGYQGVDMHTYHNIICILIEKAEKCK-DEPVILAGIEDNITLIAEIA 1348


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +2

Query: 179 LQDLVPFMPKNRKISKLEVIQHVI---DLSATFNQRWRITQLLDNLTLKGLS 325
           ++ L+ + PKNR+IS       +I    +    N+ + I  L+D LTL+G++
Sbjct: 207 IEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEI-NLMDELTLRGVT 257


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -2

Query: 580 LPSVWSLPWQRWPL 539
           +P  W  PWQ WP+
Sbjct: 469 IPLDWDRPWQAWPI 482


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 101 VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN 211
           + A  SG      DG NA  + Y++   +LV F+PKN
Sbjct: 77  IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,903
Number of Sequences: 5004
Number of extensions: 52242
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)