Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20547
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554...    31   1.1  
01_01_0256 - 2083973-2084816,2084922-2086093                           29   3.5  
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212...    29   4.6  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   4.6  
09_04_0506 - 18188785-18190599                                         28   6.0  
07_03_0045 - 12772969-12773634                                         28   6.0  
06_01_0358 + 2573241-2573324,2573509-2573636,2573769-2573971,257...    28   8.0  
01_01_0957 + 7516314-7517489                                           28   8.0  

>08_02_0056 +
           11751585-11751672,11751741-11752060,11755363-11755483,
           11755950-11756137,11756224-11756355,11756535-11756577,
           11757298-11757395
          Length = 329

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 431 VRVWRVICGGWCWA*GEGLAVSSEGGAAATCAR 333
           V VWR  CGG C    + +A +  GG  A  AR
Sbjct: 37  VAVWRCGCGGGCGGGEDAVAAAMGGGGEADAAR 69


>01_01_0256 - 2083973-2084816,2084922-2086093
          Length = 671

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 214 KDLQIRSDSACYRLICDLQSALENHPAVGQFDAEGP*RRHLAQVAAAPPSEETARPSPYA 393
           +D+ + +D+A YR+    Q A     A      + P     AQ+ A PP ++   P P  
Sbjct: 406 RDMPVGTDAASYRVPVPAQDAAAAAAAAAAAAQQPPAGYVYAQMHAPPPQQQP--PPPQQ 463

Query: 394 QHHPPQ 411
           Q   PQ
Sbjct: 464 QQPVPQ 469


>10_08_0553 -
           18720436-18720494,18721102-18721106,18721136-18721257,
           18721390-18721478,18722136-18722316,18722403-18722654,
           18722755-18722993,18723680-18723914,18724072-18724132,
           18724632-18724987
          Length = 532

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 179 LQDLVPFMPKNRKISKLEVIQHVI--DLSATFNQRWRITQLLDNLTLKGLS 325
           ++ L+ F+P NR++        V   D    +  R  +  L+D LTLKG++
Sbjct: 310 IEQLIHFLPANRQLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGIT 360


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 129 SDTGMAKTLRYKCTSRSSRISYPSCPRIER 218
           +DT +    RYKCT+   R SY    R+ER
Sbjct: 335 ADTFVEHFTRYKCTTAGERKSYGCMQRLER 364


>09_04_0506 - 18188785-18190599
          Length = 604

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 319 P*RRHLAQVAAAPPSEETARPSPYAQHHPPQ 411
           P + H+  VAA PP+    RP+P   H PPQ
Sbjct: 105 PEKVHIPGVAAVPPAPVPDRPNPV--HLPPQ 133


>07_03_0045 - 12772969-12773634
          Length = 221

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 398 CWA*GEGLAVSSEGGAAATCARWRR*GPSASNCPTAG 288
           CW  G G+AV++  GA A  +      PS  +  TAG
Sbjct: 7   CWYYGGGMAVTAAAGAGAASSTSSESQPSGYDYETAG 43


>06_01_0358 +
           2573241-2573324,2573509-2573636,2573769-2573971,
           2574129-2574254,2574522-2574680,2574857-2575050,
           2575251-2575376
          Length = 339

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = +2

Query: 56  LKMK--AITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVP-FMPKNRKISK 226
           LKMK  A+  +C   A  P I+ G+  RH             K+Q + P F+PKN  IS 
Sbjct: 212 LKMKNPAVKVICVEPAESPVISGGKPSRH-------------KIQGMGPGFVPKNLDISI 258

Query: 227 LEVIQHVIDLSATFNQR 277
           ++ I  V    A  N +
Sbjct: 259 VDEIITVTAQDAMANAK 275


>01_01_0957 + 7516314-7517489
          Length = 391

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 365 SEGGAAATCARWRR*GP 315
           ++GGAAA  ARWRR  P
Sbjct: 195 NDGGAAAAAARWRRRDP 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,618,872
Number of Sequences: 37544
Number of extensions: 393951
Number of successful extensions: 1363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)