Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20547
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.7  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   4.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.3  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 550 RWPLRGIFININHKKS 503
           RW  RG F+ +  KKS
Sbjct: 318 RWEFRGKFVGVRGKKS 333


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +2

Query: 143 GENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDLSATF 268
           G N ++    S++ D+V F+ K    S +EV+  V  +  T+
Sbjct: 8   GGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTY 49


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 396  TPSSANHPPHTNTEIKRHQKNKTNLTGRR 482
            T +SAN+   TN  + + ++ + N+T  +
Sbjct: 992  TQTSANNDKDTNAVVTQSKEARDNITATK 1020


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,114
Number of Sequences: 438
Number of extensions: 3593
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)