Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20547
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family... 30 1.7
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 30 1.7
At5g46880.1 68418.m05777 homeobox-leucine zipper family protein ... 28 5.0
At1g56080.1 68414.m06439 expressed protein 28 5.0
At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) / ... 28 5.0
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 28 6.7
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 28 6.7
At4g19050.1 68417.m02806 mob1/phocein family protein contains Pf... 27 8.8
>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
protein related to LENOD2 [Lupinus luteus]
gi|296830|emb|CAA39050; and genefinder
Length = 302
Score = 29.9 bits (64), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 393 PTPSSANHPPHTNTEIKRHQ 452
P P S HPPH NT+I +Q
Sbjct: 82 PVPPSPGHPPHQNTKISVNQ 101
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 393 PTPSSANHPPHTNTEIKRHQ 452
P P S HPPH N +I +Q
Sbjct: 168 PVPPSLKHPPHQNAKISMNQ 187
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 393 PTPSSANHPPHTNTEIKRHQ 452
P P S HPPH N +I +Q
Sbjct: 53 PVPPSPGHPPHQNAKISVNQ 72
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 393 PTPSSANHPPHTNTEIKRHQ 452
P P S HPPH N +I +Q
Sbjct: 111 PVPPSPGHPPHQNAKISVNQ 130
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 346 AAAPPSEETARPSPYAQHHPPQITLHTRTQKSNGTRK 456
A PP P P Q HP L+ R+ +SNG R+
Sbjct: 26 APLPPPPPLPPPPPPRQSHPESPNLYGRSTQSNGQRQ 62
>At5g46880.1 68418.m05777 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea
mays]; contains Pfam PF00046: Homeobox domain and Pfam
PF01852: START domain
Length = 820
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 355 PPSEETARPSPYAQHHPPQITLHTRTQKSN 444
PPS+ PSP HH P + L N
Sbjct: 248 PPSQPLINPSPMLPHHQPSLELDMSVYAGN 277
>At1g56080.1 68414.m06439 expressed protein
Length = 310
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 402 SSANHPPHTNTEIKRHQKNKTNLTGRRVKCNLG*DFLWLILINIPRSGQRCHGRLQTLGR 581
S AN PP +++ RH + R+ + L + L NI R GR +TL +
Sbjct: 227 SVANSPPRSHSVSARHPRIDGKEFFRQARSRLSYEQFSAFLANIKELNARKQGREETLQK 286
Query: 582 TE 587
E
Sbjct: 287 AE 288
>At1g02170.1 68414.m00145 latex-abundant family protein (AMC1) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 367
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 331 HLAQVAAAPPSEETARPSPYAQHHPP 408
H+A APP + ++ PSP Q H P
Sbjct: 44 HIADPRTAPPPQPSSAPSPPPQIHAP 69
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 161 QMYLSKLQDLVPFMPKNRKISKLEVIQHVI--DLSATFNQRWRITQLLDNLTLKGLS 325
Q + ++ L+ F+P++R+I V D F + L+D LTLKG++
Sbjct: 288 QEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGIT 344
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 161 QMYLSKLQDLVPFMPKNRKISKLEVIQHVI--DLSATFNQRWRITQLLDNLTLKGLS 325
Q + ++ L+ F+P++R+I V D F + L+D LTLKG++
Sbjct: 288 QEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGIT 344
>At4g19050.1 68417.m02806 mob1/phocein family protein contains Pfam
PF03637: Mob1/phocein family; contains Pfam F00560:
Leucine Rich Repeats; contains TIGRFAMS profile
TIGR01612: reticulocyte binding protein; hypothetical
protein YIL106w, Saccharomyces cerevisiae, PIR2:S48466
Length = 1405
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +2
Query: 155 EIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDLSATFNQRWRITQLLDN 304
+++ Y +++D + KN+ ++L++++H +D S T R I L D+
Sbjct: 575 KLESYFDRVKDWKDYKGKNKNFAQLQLLEH-LDFSETKIIRLPIFHLKDS 623
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,429,557
Number of Sequences: 28952
Number of extensions: 291950
Number of successful extensions: 837
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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