Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20546
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   146   3e-36
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   145   4e-36
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.4  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   7.1  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   7.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   9.4  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   9.4  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  146 bits (353), Expect = 3e-36
 Identities = 66/90 (73%), Positives = 79/90 (87%)
 Frame = +2

Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 529
           KIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  111 bits (268), Expect = 6e-26
 Identities = 55/98 (56%), Positives = 67/98 (68%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
           FPM QGVL   RVRLL+ RA H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/33 (63%), Positives = 22/33 (66%)
 Frame = +1

Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQ 591
           R+   P KEGK   KP  KAPKIQRLVTP  LQ
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQ 188


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  145 bits (352), Expect = 4e-36
 Identities = 65/90 (72%), Positives = 79/90 (87%)
 Frame = +2

Query: 260 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRAS 439
           GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  VP+RLGPKRAS
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPKRLGPKRAS 139

Query: 440 KIRKLFNLSKEDDVRRYVVKRVLQPRKEKK 529
           KIR+ FNLSKEDDVR++V++R + P+KE K
Sbjct: 140 KIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169



 Score =  111 bits (268), Expect = 6e-26
 Identities = 55/98 (56%), Positives = 67/98 (68%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFV 317
           FPM QGVL   RVRLL+ RA H   R   + E   + V
Sbjct: 61  FPMFQGVLLPHRVRLLL-RAGHPCYRPRRDGERKRKSV 97



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/33 (63%), Positives = 22/33 (66%)
 Frame = +1

Query: 493 RQTRAPAKEGKENAKPRHKAPKIQRLVTPVVLQ 591
           R+   P KEGK   KP  KAPKIQRLVTP  LQ
Sbjct: 159 RREVVPKKEGK---KPYTKAPKIQRLVTPRTLQ 188


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 553 VPYVWV*HFLFLPWLEHAFDDITTYIIFFAKVEQLTDFGSTF 428
           + +V   +FL L W    FDD    ++FF    ++T++   F
Sbjct: 148 IAFVCSPNFLTLKWNSSLFDDDLARLLFFMINSKITNYDLPF 189


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
 Frame = +3

Query: 45  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 224
           P      LFE   +      Y +R+    + ++L  EW G++  V    D     + + +
Sbjct: 319 PRRAPMDLFEAKRKKNNIKLYVRRVFITDDCEELIPEWLGFIKGVVDSEDLP-LNLSREM 377

Query: 225 LTNSRV-----RLLMQRATHVTDRAAMERENVNQFVD 320
           L  +++     + L++R   + +  A ++EN   F D
Sbjct: 378 LQQNKIMKVIRKNLVRRCLDMFNEIAEDKENFKTFYD 414


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 478 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 344
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +3

Query: 150  DEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRATHVTDRAAMERENVNQFVDVLL 329
            DEW        GG DK G   ++ +L   R+  +++       +  +E+E  ++   V+ 
Sbjct: 1055 DEWFNTPFANTGGQDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIK 1114

Query: 330  TPIS 341
             P+S
Sbjct: 1115 CPLS 1118


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 44  PGNGMPEVVRSGGRAQASYLLR 109
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,758
Number of Sequences: 5004
Number of extensions: 53737
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)