Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20546
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 118 5e-27
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 116 2e-26
09_04_0727 + 19765175-19765384,19765523-19765595,19766476-197665... 30 1.8
11_01_0125 + 1018059-1018403 29 4.2
06_03_0734 - 23980576-23980671,23980799-23981338,23981493-239817... 28 5.6
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 7.4
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 27 9.7
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 27 9.7
03_02_0411 + 8217324-8218172 27 9.7
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 9.7
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 118 bits (283), Expect = 5e-27
Identities = 62/105 (59%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Frame = +2
Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPK 138
Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 556
RASKIRKLFNLSK+DDVR+YV +R + KK+ P I+ L
Sbjct: 139 RASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 111 bits (268), Expect = 3e-25
Identities = 49/81 (60%), Positives = 61/81 (75%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
FPMKQGVLT RVRLL+ R T
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGT 81
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 526 ENAKPRHKAPKIQRLVTPVVLQ 591
+N K KAPKIQRLVTP+ LQ
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQ 190
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 116 bits (279), Expect = 2e-26
Identities = 61/105 (58%), Positives = 76/105 (72%), Gaps = 5/105 (4%)
Frame = +2
Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
+G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD PR GPK
Sbjct: 79 RGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDTEKPRMRGPK 138
Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQPRKEKKMLN-PDIRHL 556
RASKIRKLFNL+K+DDVR+YV +R + KK+ P I+ L
Sbjct: 139 RASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRL 183
Score = 114 bits (275), Expect = 5e-26
Identities = 50/81 (61%), Positives = 62/81 (76%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 203
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
FPMKQGVLT+ RVRLL+ R T
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGT 81
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 526 ENAKPRHKAPKIQRLVTPVVLQ 591
+N K KAPKIQRLVTP+ LQ
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQ 190
>09_04_0727 +
19765175-19765384,19765523-19765595,19766476-19766570,
19766666-19768450,19768533-19768721,19768816-19768958,
19769075-19769320,19769975-19770059,19770117-19770191,
19770304-19770369,19770466-19770712,19770824-19771242
Length = 1210
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 179 RWRQRQARIPDE-TGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRG 319
R+R + ++ DE + RP ++ S+S + PRR+G R R+S+RG
Sbjct: 129 RYRSSKNKVDDEVSARPKRKKLSNSSSI------PRREGLRPRRSIRG 170
>11_01_0125 + 1018059-1018403
Length = 114
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +2
Query: 155 MEGLCTSCRWRQRQARIPDETGRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGC 322
+EG+ RWR+ AR RP + S G + G K +++RGC
Sbjct: 57 VEGVGGRDRWRRGAARRGRRRQRPRDEKASGGRGGGADLGKDSGRGRTKNEALRGC 112
>06_03_0734 -
23980576-23980671,23980799-23981338,23981493-23981714,
23981791-23982144,23982460-23982546
Length = 432
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 230 KQPCSSSDAKGHSCYRPRRDGERKRK 307
K PCSS+ G C+ R + KR+
Sbjct: 14 KSPCSSAGGGGRGCHNERGSADHKRR 39
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 191 RQARIPDET--GRPDKQPCSSSDAKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 364
++ +IP + GR +K+ S++D + PRR R + R C++D + + +
Sbjct: 629 QRGQIPSDALPGRTNKKRKSTADTS----FNPRRRTSRPENASRACVLDGSTTQNRFQFI 684
Query: 365 RKGAQ 379
R+ A+
Sbjct: 685 REEAE 689
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 87 HKL-RIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQRA 263
HKL + Y +M +EVE D +W+ Y ++ G K PM++ + T ++ Q A
Sbjct: 190 HKLYKRAYHPKMISEVELD---GKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAKSQWA 246
Query: 264 THVT 275
T V+
Sbjct: 247 TLVS 250
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 410 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQPRKEK-KMLN 538
P +L K K+R L+KE D + + + +L+P K K KM N
Sbjct: 586 PLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKMSN 629
>03_02_0411 + 8217324-8218172
Length = 282
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 206 PDETGRPDKQPCSSSDAKGHSCYRP--RRDGERKRK 307
P RP+ +P S D G + +RP RR ER R+
Sbjct: 14 PPSRHRPNAKPASRKDGGGGASHRPRFRRTRERPRR 49
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 60 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 149
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,182,379
Number of Sequences: 37544
Number of extensions: 409341
Number of successful extensions: 1283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -