Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20546
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              155   2e-38
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.016
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)                 29   2.5  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   3.3  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.3  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     29   4.3  
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    28   7.5  
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    27   9.9  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  155 bits (377), Expect = 2e-38
 Identities = 81/134 (60%), Positives = 96/134 (71%), Gaps = 9/134 (6%)
 Frame = +2

Query: 155 MEGLCTSCRWRQRQARIP---DETGRPDKQPCSSSD------AKGHSCYRPRRDGERKRK 307
           + G C    W+    RI    D+ G P KQ   ++       +KGHSCYRPRR GERKRK
Sbjct: 3   VSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRK 62

Query: 308 SVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRR 487
           SVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNLSKEDDVR+
Sbjct: 63  SVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQ 122

Query: 488 YVVKRVLQPRKEKK 529
           YV++R L P KE K
Sbjct: 123 YVIRRPL-PEKEGK 135



 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 32/45 (71%), Positives = 38/45 (84%)
 Frame = +3

Query: 126 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQR 260
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+ +
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 21/28 (75%), Positives = 22/28 (78%)
 Frame = +1

Query: 508 PAKEGKENAKPRHKAPKIQRLVTPVVLQ 591
           P KEGK   K + KAPKIQRLVTPVVLQ
Sbjct: 130 PEKEGK---KAKSKAPKIQRLVTPVVLQ 154


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 251 QKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 102
           Q+ + A+  D L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
          Length = 273

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +2

Query: 293 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK-IRKLFNLSK 469
           + K KSV+   VD + S   L   R  AQE   L DG   ++L    A K + K   L K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248

Query: 470 EDDVRRYVVKRVLQPRKEKK 529
             + R  +V+   + +KEK+
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 311 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 451
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 215
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 401 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 499
           G+   + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 621 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSI 529
           L+QSE+ T  T  NY    P++L C   GF +
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 203 IPDETGRPDKQPCSSSDAKGHSCYRPRRDGERK 301
           + ++  +P KQ  +S  A GH+ Y P +DGE +
Sbjct: 142 VQEKARKPTKQ--ASGVAHGHTYYEPLKDGESR 172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,551,791
Number of Sequences: 59808
Number of extensions: 460855
Number of successful extensions: 1378
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)