Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20545
         (539 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   1.7  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   1.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.9  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.2  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   9.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.2  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 537 PVSFLYTDWKCPLY 496
           P+++  +DW CP Y
Sbjct: 44  PITYPPSDWNCPQY 57


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 537 PVSFLYTDWKCPLY 496
           P+++  +DW CP Y
Sbjct: 35  PITYPPSDWNCPQY 48


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 358 NVLERGLFC 332
           N +ERGLFC
Sbjct: 128 NCIERGLFC 136


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 499 LCSIVVCWFLSKC 461
           L  ++ CW +SKC
Sbjct: 218 LYRLLRCWLISKC 230


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 499 LCSIVVCWFLSKC 461
           L  ++ CW +SKC
Sbjct: 218 LYRLLRCWLISKC 230


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 87  RNQLRPQSPTSGA 125
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 87  RNQLRPQSPTSGA 125
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,515
Number of Sequences: 336
Number of extensions: 2076
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13201902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)