Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20545
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 95 4e-20
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 94 7e-20
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 42 3e-04
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.4
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 1.8
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.1
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.1
02_04_0548 + 23789567-23789585,23789938-23790306,23790410-237904... 29 3.1
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 4.1
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 5.5
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 27 7.2
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 27 7.2
05_05_0120 + 22520285-22520569 27 9.6
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872 27 9.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 94.7 bits (225), Expect = 4e-20
Identities = 48/95 (50%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRI
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRI 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 527
R +LDG+++IK+ LD ++ E+K++T S++Y R
Sbjct: 142 RYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRR 176
Score = 78.2 bits (184), Expect = 4e-15
Identities = 39/81 (48%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 YRLRKAFKKIHVRLVRELEKK 87
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 93.9 bits (223), Expect = 7e-20
Identities = 48/95 (50%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRV 154
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 527
R LDG +++K+ LD ++ E+K+DT SS+Y R
Sbjct: 155 RYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRR 189
Score = 63.7 bits (148), Expect = 9e-11
Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Frame = +1
Query: 70 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 243
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 244 EKK 252
EKK
Sbjct: 98 EKK 100
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 41.9 bits (94), Expect = 3e-04
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 416
K+ SGK VVF R+I+ +P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 124 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKK 252
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKK
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKK 72
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 393 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 500
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 342 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 458
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 76 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 210
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 76 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 210
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 25 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 201
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 202 KAFQKI 219
+ +++
Sbjct: 359 DSSEEL 364
>02_04_0548 +
23789567-23789585,23789938-23790306,23790410-23790495,
23791487-23791574,23791696-23791826
Length = 230
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 240 ARKEVSGKHVVFVG-DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 413
A+ V G H F G D + L K S RV K ++ S L DA+ + ++FP+E+V
Sbjct: 105 AKDGVEGTH--FTGNDSQKLEKDSQDKRVKKKVEKIMS-ALHDWPDAVFDHVLFPSEVV 160
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 28.3 bits (60), Expect = 4.1
Identities = 22/92 (23%), Positives = 43/92 (46%)
Frame = +1
Query: 22 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 201
I SGA + + S L +L + Q ++YITK +++ +K+ IY+P +
Sbjct: 323 IARSGAREANQKVCKSVILKDLYQEMERMKQGSQVYITKLSDVKAAREKN-GIYIPQERF 381
Query: 202 KAFQKIQIRLVRELEKKLVVNM*SLLETVRSC 297
A ++ + + +R+ + L L + SC
Sbjct: 382 -ALEEAEKKTMRDKIEYLETQNKELKMNIESC 412
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +1
Query: 76 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 210
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 329 QTKEATLKDIDLCVRCYPRGLG 394
Q ++++LK CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205
>03_01_0423 +
3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/88 (22%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 VKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIII 180
V++ + ++ S E +SF S+ + + + D L + Y KEI N+ ++ +
Sbjct: 528 VRVQEQELEQSRKEIESFHLSLQDEMAKRKQAEDALCSLEKQYAQSQKEI---NRLTLDM 584
Query: 181 YVPMPKLKAFQKIQIRL---VRELEKKL 255
+ +L F +++ L V EL+K++
Sbjct: 585 EMANDRLNDFNLVRLNLENTVCELKKEV 612
>05_05_0120 + 22520285-22520569
Length = 94
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = -3
Query: 405 QQGRPSPRG*HRTQRSMSLSVAS 337
QQ RPSP HR R+MS++VAS
Sbjct: 56 QQARPSPAARHR--RAMSVAVAS 76
>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
Length = 91
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 73 ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 183
A++E+E N DL + L T+ E H + S++IY
Sbjct: 2 AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,384,257
Number of Sequences: 37544
Number of extensions: 260404
Number of successful extensions: 684
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -