Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20545
(539 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 113 7e-26
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 0.46
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 4.2
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 4.2
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 7.4
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_7447| Best HMM Match : CHGN (HMM E-Value=0) 27 9.8
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 113 bits (273), Expect = 7e-26
Identities = 54/81 (66%), Positives = 68/81 (83%)
Frame = +1
Query: 10 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 189
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
+P+++AFQKIQ RLVRELEKK
Sbjct: 68 VPQIRAFQKIQTRLVRELEKK 88
Score = 46.8 bits (106), Expect(2) = 9e-10
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 350
K+ SGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 87 KKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 33.5 bits (73), Expect(2) = 9e-10
Identities = 14/23 (60%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Frame = +3
Query: 462 HLDKNQQTTIEHKVDT-SSLYTR 527
HLDK QQTTI+HK++T S++Y +
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKK 143
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 31.5 bits (68), Expect = 0.46
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Frame = +1
Query: 1 VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 162
V+MS ++ +++SG +S E+ + E N+ LK +L E L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726
Query: 163 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKL 255
K + +YV M KL++ Q ELEK+L
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKEL 1757
>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 712
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR- 422
++VS + + DR+ + K + R+ + + TL V DA+ E+L P +++G R
Sbjct: 507 RQVSVEDRPMMSDRRSMSKHGVQWRILSIYYTDTTVTLEEVKDAVKEELDGPGKLLGYRA 566
Query: 423 IRVKLDGSQLIKVHLDKNQQTTIEHKVDTSSLYTRS 530
+ K+ + V D +E +D L RS
Sbjct: 567 MHKKIRQQHDLNVTRDLVHDVMLE--LDPEGLQNRS 600
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 46 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 213
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 98 PTSKPNFGSFTLQKLKKLNYTIRS 169
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +2
Query: 77 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 175
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 487 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 380
V+CW L + + + EP N L +L ++ GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373
>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
Length = 918
Score = 27.1 bits (57), Expect = 9.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 330 KQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTI 491
K+KRP ++DAI F G + KLD L + D +++ T+
Sbjct: 799 KRKRPSIEKFAIIFDAITTKARFARYKNGSSKKHKLDKRPLFAMDSDSDEELTV 852
>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 282 DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 389
D I+P P H+T N +K L S+ D +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,393,739
Number of Sequences: 59808
Number of extensions: 296404
Number of successful extensions: 763
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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