Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20545
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   108   2e-24
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  108 bits (260), Expect = 2e-24
 Identities = 50/96 (52%), Positives = 73/96 (76%), Gaps = 2/96 (2%)
 Frame = +3

Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 422
           K+  G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+R
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRR 143

Query: 423 IRVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 527
           IRVKLDG ++ KVHLDK+ QT + HK+   +S+Y +
Sbjct: 144 IRVKLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRK 179



 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 46/79 (58%), Positives = 60/79 (75%)
 Frame = +1

Query: 16  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 195
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 196 KLKAFQKIQIRLVRELEKK 252
           +LKAF KI   LVRELEKK
Sbjct: 67  QLKAFHKIHPALVRELEKK 85


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 80  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 190
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +1

Query: 1   VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 171
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 172 I 174
           +
Sbjct: 302 V 302


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 102 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 16
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 313 LWLGLGRILRSPTKTTCLPLTSF 245
           +W+G  R  R P K +C PL +F
Sbjct: 143 VWVGAYRKARCPNKPSCTPLDTF 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,433,084
Number of Sequences: 27780
Number of extensions: 220672
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)