Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20545
(539 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 92 2e-19
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 89 1e-18
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 89 1e-18
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 89 2e-18
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 89 2e-18
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 0.86
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 0.86
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 2.0
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 28 4.6
At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1... 27 6.1
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 8.0
At3g06180.1 68416.m00710 expressed protein 27 8.0
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 91.9 bits (218), Expect = 2e-19
Identities = 45/88 (51%), Positives = 64/88 (72%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+FV R+I+ P V +RPR+RTLTSV++A+LED+ FPAEIVGKR
Sbjct: 86 KKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEAMLEDVAFPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 509
R +LDGS+++KV LD ++ E+K++T
Sbjct: 142 RYRLDGSKIMKVFLDAKEKNNTEYKLET 169
Score = 75.8 bits (178), Expect = 2e-14
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI RLVRELEKK
Sbjct: 67 FRLRKAFRKIHPRLVRELEKK 87
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 89.4 bits (212), Expect = 1e-18
Identities = 46/95 (48%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 527
R +LDG++++KV LD ++ E+KV+ S++Y +
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKK 176
Score = 70.9 bits (166), Expect = 5e-13
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 189
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KA++KI +RLVRELEKK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKK 87
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 89.4 bits (212), Expect = 1e-18
Identities = 46/95 (48%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+ + R+I+ +P K A KRPR+RTLTSV++AIL+D+V PAEIVGKR
Sbjct: 86 KKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEAILDDVVLPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT-SSLYTR 527
R +LDG++++KV LD ++ E+KV+ S++Y +
Sbjct: 142 RYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKK 176
Score = 70.9 bits (166), Expect = 5e-13
Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 189
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KA++KI +RLVRELEKK
Sbjct: 67 YRLRKAYRKIHVRLVRELEKK 87
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.0 bits (211), Expect = 2e-18
Identities = 43/88 (48%), Positives = 64/88 (72%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 509
R +LDG++++KV LD + E+K++T
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLET 169
Score = 80.2 bits (189), Expect = 8e-16
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKK 87
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 89.0 bits (211), Expect = 2e-18
Identities = 43/88 (48%), Positives = 64/88 (72%)
Frame = +3
Query: 246 KEVSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 425
K+ SGK V+FV R+I+ P + V +RPR+RTLTSV++A+LED+ +PAEIVGKR
Sbjct: 86 KKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEAMLEDVAYPAEIVGKRT 141
Query: 426 RVKLDGSQLIKVHLDKNQQTTIEHKVDT 509
R +LDG++++KV LD + E+K++T
Sbjct: 142 RYRLDGTKIMKVFLDSKLKNDTEYKLET 169
Score = 80.2 bits (189), Expect = 8e-16
Identities = 40/81 (49%), Positives = 59/81 (72%), Gaps = 2/81 (2%)
Frame = +1
Query: 16 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 189
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 190 MPKLKAFQKIQIRLVRELEKK 252
KAF+KI +RLVRELEKK
Sbjct: 67 FRLRKAFRKIHLRLVRELEKK 87
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 329 QTKEATLKDIDLCVRCYPRGLG 394
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 0.86
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 329 QTKEATLKDIDLCVRCYPRGLG 394
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 448 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 347
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 27.9 bits (59), Expect = 4.6
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Frame = +1
Query: 55 ETSISQALVELETN-SDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRL 231
E + SQ + L++ +D+K QLR+ TK+KEI + +S++ + K+Q+R
Sbjct: 915 EEAKSQEIEALQSVLTDIKLQLRDTQETKSKEIS--DLQSVLTDI---------KLQLRD 963
Query: 232 VRELEKKLVVNM*SLLETVRSCLSPATKLVLLTN 333
+E + K + ++ S L+ ++ + +K + +TN
Sbjct: 964 TQETKSKEISDLQSALQDMQLEIEELSKGLEMTN 997
>At5g65420.1 68418.m08227 cyclin, putative similar to cyclin D2.1
protein [Nicotiana tabacum] GI:4160298; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 308
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 526 LVYRLEVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTK 389
L +RL T CS + +FL K + EPSN + R + A TK
Sbjct: 173 LKWRLRAITPCSYIR-YFLRKMSKCDQEPSNTLISRSLQVIASTTK 217
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 83 NSKPTPTSKPNFGSF 127
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At3g06180.1 68416.m00710 expressed protein
Length = 241
Score = 27.1 bits (57), Expect = 8.0
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = -1
Query: 125 SSRSWALRSELVSSSTSACEIEVSKESASAPLALMIFVLIL 3
+SRS + S SSS+S+ + + K S SA L L+I +L+L
Sbjct: 24 ASRSASNHSSSSSSSSSS--LHLCKHSPSATLDLLILILVL 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,830,823
Number of Sequences: 28952
Number of extensions: 208600
Number of successful extensions: 627
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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