Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20544
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   1.9  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    26   5.9  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    25   7.9  

>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 353 IFYGKGFLE*INLIKKLEFLNFLNSFILEHTVNVLKEKKLIETNYSK 213
           I YGK  +E I  +++ EF+++LN+  L +  N L E K ++    K
Sbjct: 98  IMYGKSMVE-IGHLQE-EFMDYLNNSFLANLENSLAEFKALDVKEKK 142


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -1

Query: 683 FLKVARRSVETLVKNNNIRSKYFKRNVFCINGM 585
           +L+V ++S+E+L       ++Y+ +NV+  NGM
Sbjct: 288 YLEVWQKSLESLRHYTASLNEYYYQNVYSANGM 320


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 347 YGKGFLE*INLIKKLEFLNFLNSFILEHTVNVLKEKKLIETNYSK 213
           Y + FL  I  +KKL       +  +EH  N+     L E N SK
Sbjct: 68  YEENFLRAIAPVKKLNDTELHQTLYIEHPPNLESSTILAELNRSK 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,989
Number of Sequences: 5004
Number of extensions: 43029
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)