Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20544
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)                29   2.7  
SB_57132| Best HMM Match : RVT_1 (HMM E-Value=1.4)                     29   4.7  
SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)                   28   8.3  
SB_15971| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_47653| Best HMM Match : zf-CCHC (HMM E-Value=0.0017)
          Length = 759

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 175 HHTLYSFIPKINHGTFY*KKIMTFSNPDNCLIIEMNPIVTSD 50
           H   +SF     HGT     ++ +S  D C++  MNP+ T D
Sbjct: 617 HKKFFSFQRCSTHGTSPPTYLVQYSLADLCVLTRMNPLSTMD 658


>SB_57132| Best HMM Match : RVT_1 (HMM E-Value=1.4)
          Length = 523

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 351 NNKFSVLMSSLTDVIAEKKRFNYLMMNAPFPERN 452
           N+KF  L+S+L  +I EK   NY   N P P R+
Sbjct: 26  NSKF-FLLSTLRLLIMEKFHINYSTKNIPLPSRS 58


>SB_22715| Best HMM Match : SAM_PNT (HMM E-Value=1.8)
          Length = 996

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 345 IENNKFSVLMSSLTDVIAEKKRFNYLMMNAPFPERN 452
           ++++KF  L+S+L  +I EK   NY   N P P R+
Sbjct: 718 LKHSKF-FLLSTLRLLIMEKFHINYSTKNIPLPSRS 752


>SB_15971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 309 KTRISKFSQFIHIRTYSKCPKRKKINRNKLFKM 211
           KTR  + +QF+H    +  P+R   + ++LFK+
Sbjct: 30  KTRFEEIAQFLHFSNPNNKPQRGDADYDRLFKV 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,182,910
Number of Sequences: 59808
Number of extensions: 269327
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)