Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20544
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical...    29   2.4  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ...    27   9.6  

>AF024494-10|AAB70336.1|  642|Caenorhabditis elegans Hypothetical
           protein C38C3.7 protein.
          Length = 642

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -1

Query: 686 TFLKVARRSVETLVKNNNIRSKYFKRNVF 600
           T+L++A+R ++ +V N N+  K FK +++
Sbjct: 455 TYLEIAKRDLKLIVGNRNLEIKNFKHHIW 483


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 490 KTYIVHIISQEL*FRSGNGAFIIK*LNLFFSAITSVNDDISTENLLFSMAK 338
           K Y   I   EL  ++ NG  II  LN F  +I S+ +D  +   L+ + K
Sbjct: 99  KVYTSSIALSELPSKASNGDKIIDMLNSFEKSIKSLTEDSPSIGTLYELLK 149


>AF045643-4|AAC02597.3|  529|Caenorhabditis elegans Ligand-gated ion
           channel protein 30 protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +3

Query: 342 AIENNKFSVLMSSLTDVIAEKKRFNYLMMNAPFPERNYNSCEMI-*TMYVF-ENINVM*Y 515
           A +  K  +++S L ++I  K+R       AP+ ++  + CE +  + Y+F   INV+ +
Sbjct: 463 AEKTQKIDLIVSLLREIIHLKERIGASGQLAPYWDQIISRCEKVSLSFYLFLITINVLMF 522

Query: 516 LY 521
           LY
Sbjct: 523 LY 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,918,613
Number of Sequences: 27780
Number of extensions: 234102
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)