Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20544
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.4  

>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 265 CSNMNELRKFRNSSFLIKLIYSRNPL 342
           CSN++   K   S   +K +Y  NP+
Sbjct: 113 CSNVDSSDKCEKSFMFMKCMYEVNPI 138


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 692 PLTFLKVARRSVETLVKNNNIRSKYFKRN 606
           P+TF  VARRSV       N  S+ ++ N
Sbjct: 677 PITFQDVARRSVAN-SPTKNADSREYRSN 704


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 435  PFPERNYNSCEMI 473
            P P  NYN+C+ I
Sbjct: 1655 PVPGSNYNTCDRI 1667


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 272 LEHTVNVLKEKKLIETNY 219
           LEH++NV+ E K I+ ++
Sbjct: 31  LEHSMNVIHEWKYIDYDF 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,909
Number of Sequences: 438
Number of extensions: 3172
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)