Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20543
         (453 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   2.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   4.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   4.1  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   4.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   9.4  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    20   9.4  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 15  SGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEP 128
           SG G+L  ++     PD+  +   ++P+P  S+    P
Sbjct: 166 SGEGSLQENRYYNNSPDQYQSYQILLPTPTCSEASSSP 203


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  SSPLAQSIRHCRRTIQRSSLHPS 154
           SSP  + I    R+ + +SLHPS
Sbjct: 154 SSPFDKLIEEDSRSNEDTSLHPS 176


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  SSPLAQSIRHCRRTIQRSSLHPS 154
           SSP  + I    R+ + +SLHPS
Sbjct: 102 SSPFDKLIEEDSRSNEDTSLHPS 124


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 86  SSPLAQSIRHCRRTIQRSSLHPS 154
           SSP  + I    R+ + +SLHPS
Sbjct: 285 SSPFDKLIEEDSRSNEDTSLHPS 307


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 238 TQRTATEPPGVADHVRRDDVPAVPRTA 318
           TQRT+T  P  +         +VP TA
Sbjct: 86  TQRTSTSNPTYSSRSVMTSCSSVPTTA 112


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 370 QTREGHHVDRPVAQVGVQL 314
           Q R+ H VD  + Q+G  L
Sbjct: 28  QMRQVHEVDNQLKQMGCDL 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,125
Number of Sequences: 336
Number of extensions: 2264
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)