Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20543
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 139 2e-34
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 98 6e-22
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 91 1e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 83 2e-17
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 30 0.14
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 28 0.58
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 28 0.77
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 27 1.8
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 1.8
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 26 3.1
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 4.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.4
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 25 7.2
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 24 9.5
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 24 9.5
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 24 9.5
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 24 9.5
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 139 bits (336), Expect = 2e-34
Identities = 63/84 (75%), Positives = 73/84 (86%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLL+SKIREEYPDR+M T+SV P+PK SDTVVEPYNA LS+HQLVEN+DET+
Sbjct: 141 GGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETF 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
CIDNEAL I TLK+ +P+Y D
Sbjct: 201 CIDNEALSSIFANTLKIKSPSYDD 224
Score = 101 bits (243), Expect = 4e-23
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P+ LNHLVS M+GVTT RFPG+LN+DLR +VNMVPFPRLHFFM GFAPL + GS
Sbjct: 220 PSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSS 279
Query: 419 QYRALTVPALT 451
++A++VP LT
Sbjct: 280 SFQAVSVPELT 290
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 97.9 bits (233), Expect = 6e-22
Identities = 42/82 (51%), Positives = 59/82 (71%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G LL+ ++ EY + +SV P+P+VS +VVEPYN+VL+ H ++N+D T+
Sbjct: 147 GGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTF 206
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA YDIC R L + PTY
Sbjct: 207 MVDNEACYDICRRNLDIERPTY 228
Score = 60.9 bits (141), Expect = 9e-11
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+ S
Sbjct: 226 PTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKA 285
Query: 419 QYRALTVPALT 451
+ + +V +T
Sbjct: 286 FHESNSVQEIT 296
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 90.6 bits (215), Expect = 1e-19
Identities = 39/82 (47%), Positives = 56/82 (68%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG G LL+ ++ EY + +SV P+P+VS +VVEPYN+VL+ H ++ D T+
Sbjct: 143 GGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTF 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNE+ YDIC R L + P+Y
Sbjct: 203 MVDNESCYDICRRNLDIERPSY 224
Score = 62.1 bits (144), Expect = 4e-11
Identities = 26/71 (36%), Positives = 42/71 (59%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P+ LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+ S
Sbjct: 222 PSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKA 281
Query: 419 QYRALTVPALT 451
+ + +V +T
Sbjct: 282 FHESNSVQEIT 292
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 83.0 bits (196), Expect = 2e-17
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNAVLSIHQLVENTDET 179
GGTGSG+G+ L+ ++ + YP +I+ TYSV P S VSD VV+PYN++L++ +L N D
Sbjct: 143 GGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSV 202
Query: 180 YCIDNEALYDICYRTLKVPNPTY 248
+DN AL I L NPT+
Sbjct: 203 VVLDNAALAHIAADRLHTQNPTF 225
Score = 57.6 bits (133), Expect = 8e-10
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +2
Query: 203 LRYLLQDSQGTE-PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFF 379
L ++ D T+ P + N LVS MS TT LR+PG +N DL + +++P PR HF
Sbjct: 210 LAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFL 269
Query: 380 MPGFAPLTSRGSQQYRAL 433
+ + P T++ ++ +A+
Sbjct: 270 LTSYTPFTNQQVEEAKAI 287
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 30.3 bits (65), Expect = 0.14
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 41 KDPRRVPRQNHEHILSSPLAQSIRHCRRTIQRSSLHPSTSREYRRNLLHRQRGPLRY-LL 217
K P + ++N + L+S S+ H + + +L S E RR+L + R + +L
Sbjct: 210 KPPPKASQKNEKVSLTSIKNTSLSHFSKFNFKYALPIHMSLENRRSLENLFRNMNTWDIL 269
Query: 218 QDSQGTEPNVRRLNHLVSL 274
+D++ EP+ +N L+SL
Sbjct: 270 EDTKNLEPDTSIVNDLISL 288
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 28.3 bits (60), Expect = 0.58
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Frame = +3
Query: 84 SVVPSPKVSDTVVE------PYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVP 236
S+ P+P+ DTV+ PYNA+ +Q V+ T + A I Y K+P
Sbjct: 924 SLTPNPQQQDTVINAVPTFAPYNAMTKFNQKVKVMPGTGKVGKAARESIAYFMKKLP 980
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.9 bits (59), Expect = 0.77
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLN 322
P+ RL HLV + G++ C +PG+ N
Sbjct: 326 PHKIRLTHLVDAPLLGMSVCPLYPGEEN 353
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 26.6 bits (56), Expect = 1.8
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -1
Query: 450 VSAGTVSARYCWLPRDVSGAKPGMKKCRRGKGTMLTDQLRRSAFSCPGNRRHVVTPDMV 274
++ G + R C + A+ K+ +GK T + + P RRH+ D+V
Sbjct: 350 IAYGGIPMRVCHSDSTLCDARIAAKQALKGKRQYDTSTSKAELSTPPSKRRHIDDADLV 408
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/47 (23%), Positives = 22/47 (46%)
Frame = -2
Query: 305 TAGTSSRRTWSATPGGSVAVRWVRYLESPVADIVKGLVVYAVSFVCI 165
+A T + S+ P G+ + P+ ++ GL+V + F C+
Sbjct: 73 SASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLGGLIVLVIIFYCL 119
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 131 QRSSLHPSTSREYRRNLLHRQRG 199
Q SSLHPS+SR + + H RG
Sbjct: 201 QLSSLHPSSSRRHLISTPHVNRG 223
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 84 SVVPSPKVSDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDI 212
SV SPK + Y AV +IH++ +T + E LY I
Sbjct: 272 SVYESPKFYLAKGDDYKAVETIHKIARINGKTCTLTVEELYAI 314
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 38 LKDPRRVPRQNHEHILSSPLAQS 106
+++P +P+QNHEH SPL +S
Sbjct: 641 VQNPLLMPQQNHEH---SPLVRS 660
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 24.6 bits (51), Expect = 7.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 83 LSSPLAQSIRHCRRTIQRSSLHPSTSREYRRNLLHRQRGPLR 208
L+ PL TI+ + S S E N+LH Q P+R
Sbjct: 3 LTRPLGDISSSATVTIESTEESASISHEESENVLHLQPEPVR 44
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 24.2 bits (50), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 405 DVSGAKPGMKKCRRGKGTMLTDQLRRSAFSC 313
D + K G+K KGT+ + RSAF+C
Sbjct: 181 DSATVKKGLKSGTLFKGTLRILENHRSAFAC 211
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.2 bits (50), Expect = 9.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 129 YNAVLSIHQLVENTDETYCI 188
+N L+++ +V N DET+ I
Sbjct: 1419 FNVCLAVNTIVNNVDETFSI 1438
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +2
Query: 104 SIRHCRRTIQRSSLHPS-TSREYRRNLLHRQRGPLRYLLQDSQGT 235
S RH + +SSLHPS TS ++ ++ P Q T
Sbjct: 350 STRHVSNSTNKSSLHPSPTSLRVAHPIIPQRASPASQSFPSLQDT 394
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +3
Query: 63 DRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY---CIDNEA 200
D+ S+V T++EP + + H+L E +TY +D+EA
Sbjct: 62 DKFEEVESLVYEFSTPSTLIEPNYLLTAWHELWEELQDTYMTPILDSEA 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,720,915
Number of Sequences: 5004
Number of extensions: 35847
Number of successful extensions: 134
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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