Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20543
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 151 3e-37
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 150 4e-37
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 150 4e-37
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 150 4e-37
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 149 1e-36
03_01_0034 + 318432-318825,318902-319851 149 1e-36
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 149 1e-36
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 149 1e-36
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 100 1e-21
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 100 1e-21
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 99 2e-21
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 80 9e-16
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 76 2e-14
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654... 31 0.57
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 30 1.0
08_02_0480 + 17632176-17632814,17633838-17633906 30 1.0
12_02_0970 + 24939345-24939416,24940689-24941054 29 1.7
08_02_1118 - 24419167-24420130,24420456-24420463 29 2.3
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 29 2.3
11_02_0091 - 8233155-8233333,8233414-8233738 28 4.0
11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203 27 5.3
08_02_1195 - 25149891-25151402,25152194-25152493 27 7.1
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 27 9.3
07_03_1094 + 23919878-23920520,23921297-23921363,23921364-239214... 27 9.3
06_01_0857 + 6502039-6502530 27 9.3
04_04_0920 + 29429114-29430934 27 9.3
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 27 9.3
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 27 9.3
01_01_1017 - 8036894-8036907,8037478-8038690 27 9.3
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 151 bits (366), Expect = 3e-37
Identities = 68/84 (80%), Positives = 76/84 (90%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 157 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 216
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ NP++GD
Sbjct: 217 VLDNEALYDICFRTLKLTNPSFGD 240
Score = 126 bits (303), Expect = 1e-29
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 234 TNPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 293
Query: 413 SQQYRALTVPALT 451
SQQYRALTVP LT
Sbjct: 294 SQQYRALTVPELT 306
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 150 bits (364), Expect = 4e-37
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ PT+GD
Sbjct: 201 VLDNEALYDICFRTLKLATPTFGD 224
Score = 123 bits (297), Expect = 6e-29
Identities = 56/71 (78%), Positives = 61/71 (85%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 220 PTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 419 QYRALTVPALT 451
QYRALTVP LT
Sbjct: 280 QYRALTVPELT 290
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 150 bits (364), Expect = 4e-37
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ PT+GD
Sbjct: 201 VLDNEALYDICFRTLKLATPTFGD 224
Score = 123 bits (297), Expect = 6e-29
Identities = 56/71 (78%), Positives = 61/71 (85%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 220 PTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 419 QYRALTVPALT 451
QYRALTVP LT
Sbjct: 280 QYRALTVPELT 290
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 150 bits (364), Expect = 4e-37
Identities = 68/84 (80%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ PT+GD
Sbjct: 201 VLDNEALYDICFRTLKLATPTFGD 224
Score = 123 bits (297), Expect = 6e-29
Identities = 56/71 (78%), Positives = 61/71 (85%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 220 PTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 419 QYRALTVPALT 451
QYRALTVP LT
Sbjct: 280 QYRALTVPELT 290
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 321 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 380
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 381 VLDNEALYDICFRTLKLTTPSFGD 404
Score = 125 bits (302), Expect = 1e-29
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 398 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 457
Query: 413 SQQYRALTVPALT 451
SQQYRALTVP LT
Sbjct: 458 SQQYRALTVPELT 470
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGD 224
Score = 125 bits (302), Expect = 1e-29
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 277
Query: 413 SQQYRALTVPALT 451
SQQYRALTVP LT
Sbjct: 278 SQQYRALTVPELT 290
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 162 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 221
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 222 VLDNEALYDICFRTLKLTTPSFGD 245
Score = 125 bits (302), Expect = 1e-29
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 239 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 298
Query: 413 SQQYRALTVPALT 451
SQQYRALTVP LT
Sbjct: 299 SQQYRALTVPELT 311
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGD 224
Score = 125 bits (302), Expect = 1e-29
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 277
Query: 413 SQQYRALTVPALT 451
SQQYRALTVP LT
Sbjct: 278 SQQYRALTVPELT 290
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 99.5 bits (237), Expect = 1e-21
Identities = 43/82 (52%), Positives = 61/82 (74%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAV 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLDIERPTY 224
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 419 QYRALTVPALT 451
+ L+V +T
Sbjct: 282 YHEQLSVAEIT 292
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 99.5 bits (237), Expect = 1e-21
Identities = 43/82 (52%), Positives = 61/82 (74%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAV 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLDIERPTY 224
Score = 64.9 bits (151), Expect = 3e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 419 QYRALTVPALT 451
+ L+V +T
Sbjct: 282 YHEQLSVAEIT 292
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 98.7 bits (235), Expect = 2e-21
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + +++ PSP+VS VVEPYN+VLS H L+E+TD
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLDIERPTY 224
Score = 68.1 bits (159), Expect = 3e-12
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLISQIISSLTTSLRFDGAINVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 419 QYRALTVPALT 451
+ L+VP +T
Sbjct: 282 YHEQLSVPEIT 292
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 79.8 bits (188), Expect = 9e-16
Identities = 42/103 (40%), Positives = 60/103 (58%), Gaps = 21/103 (20%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSP---------------------KVSDTV 119
GGTGSG+G+LL+ ++ +Y + +++ PSP K+S V
Sbjct: 203 GGTGSGLGSLLLERLSVDYGRKSKLGFTIYPSPQYFFMSSSCMHIMSDTQISQCKISTAV 262
Query: 120 VEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKVPNPTY 248
VEPYN+VLS H L+E+TD +DNEA+YDIC R+L + PTY
Sbjct: 263 VEPYNSVLSTHSLIEHTDVVVLLDNEAIYDICKRSLDIERPTY 305
Score = 64.9 bits (151), Expect = 3e-11
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S
Sbjct: 303 PTYTNLNRLISQVISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPIISVEKA 362
Query: 419 QYRALTVPALT 451
+ +VP +T
Sbjct: 363 FHEQHSVPEIT 373
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 75.8 bits (178), Expect = 2e-14
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNAVLSIHQLVENTDET 179
GGTGSGMG+ L+ + + Y +++ TYSV P+ + SD VV+PYN++L++ +L N D
Sbjct: 143 GGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCV 202
Query: 180 YCIDNEALYDICYRTLKVPNPTY 248
+DN AL I L + NPT+
Sbjct: 203 VVLDNTALNRIAVERLHLANPTF 225
Score = 58.8 bits (136), Expect = 2e-09
Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLT-SRGS 415
P + N LVS MS TT LR+PG +N DL +++P PR HF M G+ PLT R
Sbjct: 223 PTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQV 282
Query: 416 QQYRALTV 439
R TV
Sbjct: 283 NMIRKTTV 290
>04_01_0500 -
6540769-6541482,6541819-6541877,6541965-6542064,
6542113-6542322,6542507-6542765,6544022-6544215
Length = 511
Score = 30.7 bits (66), Expect = 0.57
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -1
Query: 411 PRDVSGAKPGMKKCRRGKGT--MLTDQLRRSA 322
P D + P +KKC++ KGT ++TD RRSA
Sbjct: 402 PPDNISSIPSLKKCKKSKGTNVVITDTDRRSA 433
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 326 RRSAVRGTA-GTSSRRTWSATPGGSVAVRWVRYLESPVADIVKGLV 192
R A R + G+ RR+ GGS RW ++P+A + +G+V
Sbjct: 274 REGAARWVSPGSGERRSGGDADGGSGRARWQSARQAPMASVGRGVV 319
>08_02_0480 + 17632176-17632814,17633838-17633906
Length = 235
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 284 RTWSA-TPGGSVAVRWVRYLESPVADIVKG 198
R WS T GG ++ W+R+L +PV + V G
Sbjct: 160 RWWSGMTTGGGGSILWMRWLRAPVTEGVAG 189
>12_02_0970 + 24939345-24939416,24940689-24941054
Length = 145
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 426 RYCWLPRDVSGAKPGMKKCRRGK-GTMLTDQLR 331
R CW ++ G PG + RRG+ G +L D +R
Sbjct: 18 RRCWGGQEEGGVAPGRRSRRRGRGGGVLADDVR 50
>08_02_1118 - 24419167-24420130,24420456-24420463
Length = 323
Score = 28.7 bits (61), Expect = 2.3
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 100 PKYQTLSSNHTTQFSPSIN*SRIQTKLTA*TTRP---FTISATGLSRYRTQRTATEPPGV 270
P +S+H S S + + IQ + + RP T + S Q +++ P
Sbjct: 245 PDASVRTSHHNEDASASTS-ATIQQFTLSSSARPGPAHTDARASTSSTTMQLSSSSTPPT 303
Query: 271 ADHVRRDDVPAVPRTAERR 327
A RRDD P+ PR A+RR
Sbjct: 304 APR-RRDDQPSPPRPAQRR 321
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -3
Query: 343 RPVAQVGVQLSGEPQARRH-AGHGQRHQVVQSP 248
RP +V Q G P RR AG G R V Q P
Sbjct: 15 RPACRVASQCGGRPSTRRRGAGGGPRRAVPQPP 47
>11_02_0091 - 8233155-8233333,8233414-8233738
Length = 167
Score = 27.9 bits (59), Expect = 4.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Frame = -1
Query: 270 DTRWFSRRTLGSVP*ESCSRYRKGPRCLCSKFRL---YSRLVDGWRELR-CMVRRQCLIL 103
D W +R ++P E+ S K RC C L + VDG E R ++ + C L
Sbjct: 5 DRHWIARWFYHTIPFEAGSESAKALRCRCRAIALNREHKIAVDGAMEARFALLHKVCSRL 64
Query: 102 WARGLL 85
R L+
Sbjct: 65 SCRDLV 70
>11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203
Length = 440
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 326 RRSAVRGTAGTSSRRTWSATPG 261
RRS+ RGT + R TW + PG
Sbjct: 141 RRSSTRGTTTATPRCTWRSWPG 162
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 27.1 bits (57), Expect = 7.1
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 137 SSLHPSTSREYRRNLLHRQRGPLRYLLQDSQGTEPNVRRLNHLVSLT-MSGVTTC 298
S LH S+S E+RRN + + P LQ + T+ ++ + L VTTC
Sbjct: 154 SELHFSSSNEHRRNRMGCRNHP--SFLQPALSTDSFIKSASKRTDLAEFKAVTTC 206
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -3
Query: 310 GEPQARRHAGHGQRHQVVQSPYVGFGTLRVL*QIS*RASLSMQ*VSSV 167
G P ++HA + +V+ PY+ GTL V ++S +SL + +SV
Sbjct: 77 GRPGPQKHAHAARLAEVLAVPYISMGTL-VRQELSPASSLYKKIANSV 123
>07_03_1094 +
23919878-23920520,23921297-23921363,23921364-23921453,
23922220-23922284,23922372-23922470,23922851-23922992,
23923100-23923139
Length = 381
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 338 SCAGRRSAVRGTAGTSSRRTWSATPGG 258
+C GRRS RG G SS + S+ GG
Sbjct: 21 ACGGRRSKRRGGGGGSSGSSGSSGGGG 47
>06_01_0857 + 6502039-6502530
Length = 163
Score = 26.6 bits (56), Expect = 9.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 219 CSRYRKGPRCLCSKFRLYSRLVDGWRE 139
C RYR+ P+C + R + +GW +
Sbjct: 29 CHRYRRLPQCHVAGLRRRYEMCEGWEQ 55
>04_04_0920 + 29429114-29430934
Length = 606
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +2
Query: 38 LKDPRRVPRQNHEHILSSPLAQSIRHCRRTIQRSSLHP 151
L PRR P Q + LA + HC R+ L P
Sbjct: 14 LHPPRRTPSQTSLWTIRRQLASFVLHCSRSCASPLLEP 51
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 41 KDPRRVPRQN-HEHILSSPLAQSIRHCRRTIQRSSLHPSTSR 163
K PR+ P+ + SSPLAQ++ RR+I+R P+ R
Sbjct: 48 KYPRKNPKPPPNPSPSSSPLAQTLASIRRSIRRPEDGPAAPR 89
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 411 PRDVSGAKPGMKKCRRGKGTMLTDQLRRSAFSCP 310
P+D + + G+ +CR G G D+L CP
Sbjct: 32 PQDEAYFRGGVIRCRDGSGRFARDKLNDDFCDCP 65
>01_01_1017 - 8036894-8036907,8037478-8038690
Length = 408
Score = 26.6 bits (56), Expect = 9.3
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +2
Query: 116 CRRTIQRSSLHPSTSREYRRNLLHRQRGPLRYLLQDSQGTEPNVRRLNHLVSLTMSGV-- 289
C T++ + L+P S EYR L G +R D G P +R L L + +G+
Sbjct: 116 CHATLRMAYLYPPCSDEYRL-LYAGNVGMIRRTAAD--GDHP-IRLLAELQIESGNGIHR 171
Query: 290 TTCLRFPGQLNADLRNWSVNMVPFP 364
T LR+ +L L W+ V +P
Sbjct: 172 ATLLRYSQELG--LGGWASTKVNYP 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,306,023
Number of Sequences: 37544
Number of extensions: 268142
Number of successful extensions: 991
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -