Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20543
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 153 5e-38
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 153 5e-38
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 149 9e-37
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 149 1e-36
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 149 1e-36
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 149 1e-36
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 149 1e-36
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 149 1e-36
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 149 1e-36
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 100 5e-22
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 100 5e-22
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 100 5e-22
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 100 5e-22
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 99 2e-21
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 99 2e-21
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 97 4e-21
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 76 1e-14
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 75 2e-14
At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF0051... 29 1.1
At1g67500.1 68414.m07688 DNA polymerase family B protein similar... 29 1.5
At5g56250.2 68418.m07020 expressed protein 29 1.9
At5g56250.1 68418.m07019 expressed protein 29 1.9
At2g45490.1 68415.m05658 protein kinase, putative contains prote... 29 1.9
At3g23480.1 68416.m02958 cyclopropane fatty acid synthase-relate... 28 2.6
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 28 3.4
At5g20860.1 68418.m02477 pectinesterase family protein contains ... 27 4.5
At4g30900.1 68417.m04388 expressed protein 27 4.5
At1g61120.1 68414.m06886 terpene synthase/cyclase family protein... 27 4.5
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas... 27 5.9
At2g12190.1 68415.m01316 cytochrome P450, putative 27 5.9
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 27 7.8
At3g11680.1 68416.m01432 expressed protein contains Pfam profile... 27 7.8
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 153 bits (371), Expect = 5e-38
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ NPT+GD
Sbjct: 201 VLDNEALYDICFRTLKLANPTFGD 224
Score = 119 bits (287), Expect = 8e-28
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 220 PTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 419 QYRALTVPALT 451
QY AL+VP LT
Sbjct: 280 QYSALSVPELT 290
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 153 bits (371), Expect = 5e-38
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ NPT+GD
Sbjct: 201 VLDNEALYDICFRTLKLANPTFGD 224
Score = 119 bits (287), Expect = 8e-28
Identities = 54/71 (76%), Positives = 60/71 (84%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 220 PTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 419 QYRALTVPALT 451
QY AL+VP LT
Sbjct: 280 QYSALSVPELT 290
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 149 bits (361), Expect = 9e-37
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 201 VLDNEALYDICFRTLKLSTPSFGD 224
Score = 121 bits (292), Expect = 2e-28
Identities = 55/71 (77%), Positives = 61/71 (85%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 279
Query: 419 QYRALTVPALT 451
QYR LTVP LT
Sbjct: 280 QYRNLTVPELT 290
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGD 224
Score = 124 bits (299), Expect = 3e-29
Identities = 56/73 (76%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 277
Query: 413 SQQYRALTVPALT 451
SQQYR+LTVP LT
Sbjct: 278 SQQYRSLTVPELT 290
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGD 224
Score = 124 bits (299), Expect = 3e-29
Identities = 56/73 (76%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 277
Query: 413 SQQYRALTVPALT 451
SQQYR+LTVP LT
Sbjct: 278 SQQYRSLTVPELT 290
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGD 224
Score = 125 bits (302), Expect = 1e-29
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 277
Query: 413 SQQYRALTVPALT 451
SQQYRALTVP LT
Sbjct: 278 SQQYRALTVPELT 290
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 141 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 200
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 201 VLDNEALYDICFRTLKLTTPSFGD 224
Score = 125 bits (302), Expect = 1e-29
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRG 412
T P+ LNHL+S TMSGVT CLRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRG
Sbjct: 218 TTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRG 277
Query: 413 SQQYRALTVPALT 451
SQQYRALTVP LT
Sbjct: 278 SQQYRALTVPELT 290
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 142 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 201
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 202 VLDNEALYDICFRTLKLSTPSFGD 225
Score = 115 bits (277), Expect = 1e-26
Identities = 53/71 (74%), Positives = 60/71 (84%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P+ LNHL+S TMSGVT LRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 221 PSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 280
Query: 419 QYRALTVPALT 451
QY +LTVP LT
Sbjct: 281 QYISLTVPELT 291
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 149 bits (360), Expect = 1e-36
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSGMGTLLISKIREEYPDR+M T+SV PSPKVSDTVVEPYNA LS+HQLVEN DE
Sbjct: 142 GGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM 201
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEALYDIC+RTLK+ P++GD
Sbjct: 202 VLDNEALYDICFRTLKLSTPSFGD 225
Score = 115 bits (277), Expect = 1e-26
Identities = 53/71 (74%), Positives = 60/71 (84%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P+ LNHL+S TMSGVT LRFPGQLN+DLR +VN++PFPRLHFFM GFAPLTSRGSQ
Sbjct: 221 PSFGDLNHLISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQ 280
Query: 419 QYRALTVPALT 451
QY +LTVP LT
Sbjct: 281 QYISLTVPELT 291
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 100 bits (239), Expect = 5e-22
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD +
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLNIERPTY 224
Score = 63.7 bits (148), Expect = 6e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 419 QYRALTVPALT 451
+ L+V +T
Sbjct: 282 FHEQLSVAEIT 292
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 100 bits (239), Expect = 5e-22
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD +
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLNIERPTY 224
Score = 63.7 bits (148), Expect = 6e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 419 QYRALTVPALT 451
+ L+V +T
Sbjct: 282 FHEQLSVAEIT 292
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 100 bits (239), Expect = 5e-22
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD +
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLSIERPTY 224
Score = 63.7 bits (148), Expect = 6e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 419 QYRALTVPALT 451
+ L+V +T
Sbjct: 282 FHEQLSVAEIT 292
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 100 bits (239), Expect = 5e-22
Identities = 43/82 (52%), Positives = 62/82 (75%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + ++V PSP+VS +VVEPYN+VLS H L+E+TD +
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSI 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLSIERPTY 224
Score = 63.7 bits (148), Expect = 6e-11
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN LVS +S +T LRF G LN D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA 281
Query: 419 QYRALTVPALT 451
+ L+V +T
Sbjct: 282 FHEQLSVAEIT 292
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 98.7 bits (235), Expect = 2e-21
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + +++ PSP+VS VVEPYN+VLS H L+E+TD
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLDIERPTY 224
Score = 69.3 bits (162), Expect = 1e-12
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKA 281
Query: 419 QYRALTVPALT 451
+ L+VP +T
Sbjct: 282 YHEQLSVPEIT 292
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 98.7 bits (235), Expect = 2e-21
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ +Y + +++ PSP+VS VVEPYN+VLS H L+E+TD
Sbjct: 143 GGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAV 202
Query: 183 CIDNEALYDICYRTLKVPNPTY 248
+DNEA+YDIC R+L + PTY
Sbjct: 203 LLDNEAIYDICRRSLDIERPTY 224
Score = 69.3 bits (162), Expect = 1e-12
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN L+S +S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYTNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKA 281
Query: 419 QYRALTVPALT 451
+ L+VP +T
Sbjct: 282 YHEQLSVPEIT 292
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 97.5 bits (232), Expect = 4e-21
Identities = 41/84 (48%), Positives = 61/84 (72%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVENTDETY 182
GGTGSG+G+LL+ ++ ++ + +++ PSP+VS VVEPYN+VLS H L+E+TD
Sbjct: 143 GGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVVV 202
Query: 183 CIDNEALYDICYRTLKVPNPTYGD 254
+DNEA+YDIC R+L + PTY +
Sbjct: 203 LLDNEAIYDICRRSLDIERPTYSN 226
Score = 70.1 bits (164), Expect = 6e-13
Identities = 28/71 (39%), Positives = 43/71 (60%)
Frame = +2
Query: 239 PNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQ 418
P LN L+S T+S +TT LRF G +N D+ + N+VP+PR+HF + +AP+ S
Sbjct: 222 PTYSNLNRLISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKA 281
Query: 419 QYRALTVPALT 451
+ +VP +T
Sbjct: 282 YHEQFSVPEIT 292
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 75.8 bits (178), Expect = 1e-14
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNAVLSIHQLVENTDET 179
GGTGSGMG+ L+ + + Y +++ TYSV P+ + SD VV+PYN++L++ +L N D
Sbjct: 143 GGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCV 202
Query: 180 YCIDNEALYDICYRTLKVPNPTY 248
+DN AL I L + NPT+
Sbjct: 203 VVLDNTALNRIAVERLHLTNPTF 225
Score = 61.3 bits (142), Expect = 3e-10
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLT-SR 409
T P + N LVS MS TT LR+PG +N DL +++P PR HF M G+ PLT R
Sbjct: 221 TNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER 280
Query: 410 GSQQYRALTV 439
+ R TV
Sbjct: 281 QANVIRKTTV 290
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 75.4 bits (177), Expect = 2e-14
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 GGTGSGMGTLLISKIREEYPDRIMNTYSVVPSP-KVSDTVVEPYNAVLSIHQLVENTDET 179
GGTGSGMG+ L+ + + Y +++ TYSV P+ + SD VV+PYN++L++ +L N D
Sbjct: 143 GGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCV 202
Query: 180 YCIDNEALYDICYRTLKVPNPTY 248
+DN AL I L + NPT+
Sbjct: 203 VVLDNTALGRIAVERLHLTNPTF 225
Score = 61.3 bits (142), Expect = 3e-10
Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 233 TEPNVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLT-SR 409
T P + N LVS MS TT LR+PG +N DL +++P PR HF M G+ PLT R
Sbjct: 221 TNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVER 280
Query: 410 GSQQYRALTV 439
+ R TV
Sbjct: 281 QANVIRKTTV 290
>At3g17670.1 68416.m02256 ferredoxin-related contains Pfam PF00515:
TPR Domain; similar to ferredoxin PetF2 (GI:22651984)
[Synechococcus sp. PCC 7002]
Length = 366
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 417 WLPRDVSGAKPGMKKCRRGKGTMLTDQLRRSAFSCPG-NRRHVVTPDMVSDTRW 259
W+ R SGAK MK +G+ + R F+C G R + V +M+ W
Sbjct: 40 WIVRTQSGAKTCMKSKAKGRCVICHGSGRVDCFNCCGKGRTNCVDVEMLPRGEW 93
>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
SP|Q61493 DNA polymerase zeta catalytic subunit (EC
2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
DNA polymerase family B
Length = 1890
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +2
Query: 251 RLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFFMPGFAPLTSRGSQQYR 427
RLN L + + R G + ADL W + M PRL G PL S+ S + R
Sbjct: 1724 RLNDLYYINKQIIPALQRVFGLVGADLNQWFLEM---PRLTRSSLGQRPLNSKNSHKTR 1779
>At5g56250.2 68418.m07020 expressed protein
Length = 811
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 67 ES*THTQ*SPRPKYQTLSSNHTTQFSPSIN 156
E +H + SP+P Q L + T Q SPS+N
Sbjct: 760 EEPSHNESSPKPTSQFLDLSKTQQASPSVN 789
>At5g56250.1 68418.m07019 expressed protein
Length = 811
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 67 ES*THTQ*SPRPKYQTLSSNHTTQFSPSIN 156
E +H + SP+P Q L + T Q SPS+N
Sbjct: 760 EEPSHNESSPKPTSQFLDLSKTQQASPSVN 789
>At2g45490.1 68415.m05658 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to protein kinase
p46XlEg22 [Xenopus laevis] gi|609280|emb|CAA78914
Length = 288
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 153 QLVENTDETYCIDNEALYDICYRTLKVPNPTY 248
++VEN D Y +DN L +CY L NP +
Sbjct: 187 EMVENRDHDYAVDNWTLGILCYEFL-YGNPPF 217
>At3g23480.1 68416.m02958 cyclopropane fatty acid synthase-related
similar to cyclopropane synthase [Sterculia foetida]
GI:21069167
Length = 513
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 83 LSSPLAQSIRHCRRTIQRSSLHP-STSREYRRNLLHRQR 196
++S +A S R C ++ +H T R +R+NLL RQ+
Sbjct: 358 VTSAMASSSRLCIENVENIGIHYYPTLRYWRKNLLERQK 396
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 242 NVRRLNHLVSLTMSGVTTCLRFPGQLNADLRNWSVNMVPFPRLHFF 379
++R L++L+ L MSG T FP +N +N+ RL F
Sbjct: 810 SIRNLHNLIELDMSGCTNLETFPTGINLQSLK-RINLARCSRLKIF 854
>At5g20860.1 68418.m02477 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 512
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 108 SDTVVEPYNAVLSIHQLVENTDETYCIDNEALYDICYRTLKV 233
S+ ++ P ++ + +LV D TY + + ++ D C R +K+
Sbjct: 77 SNLLIPPLSSSMGSSKLVSLEDSTYTLPSPSVSDSCERLMKM 118
>At4g30900.1 68417.m04388 expressed protein
Length = 254
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 223 LSRYRTQRTATEPPGVADHVRRDDVPAVPRTAERRPAQLVGQH 351
++ Y Q EPPG + + ++ + A RR A L QH
Sbjct: 58 MAAYTFQLKGAEPPGFSFQIVNTNLDEISPRARRRSALLTWQH 100
>At1g61120.1 68414.m06886 terpene synthase/cyclase family protein
similar to S-linalool synthase GI:1491939 from [Clarkia
breweri][PMID: 8768373]
Length = 877
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 158 SREYRRNLLHRQRGPLRYLLQDSQGTEPNVRRLNHL 265
+REY RNLL ++R ++ T P + RL HL
Sbjct: 399 AREYTRNLLEKRRSIKEKMIMHELST-PWIARLKHL 433
>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
(GSA 2) / glutamate-1-semialdehyde aminotransferase 2
(GSA-AT 2) identical to GSA2 [SP|Q42522]
Length = 472
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 90 VPSPKVSDTVVEPYNAVLSIHQLVE 164
VP SDT+ PYN + ++ +L E
Sbjct: 215 VPKAATSDTLTAPYNDIAAVEKLFE 239
>At2g12190.1 68415.m01316 cytochrome P450, putative
Length = 512
Score = 27.1 bits (57), Expect = 5.9
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +2
Query: 53 RVPRQNHEHILSSPLAQSIRHCRRTIQRSSLHPSTSREYRRNLLHRQRGPLRYLLQ---D 223
++ N +I SS + R RR + LHPS R Y H +R L L
Sbjct: 110 KIISSNQHNISSSLYGATWRLLRRNLTSEILHPSRVRSYS----HARRWVLEILFDRFGK 165
Query: 224 SQGTEPNV 247
S+G EP V
Sbjct: 166 SRGEEPIV 173
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 131 QRSSLHPSTSREYRRNLLHRQRGPLRY 211
+R P+ S +RR HR R PLRY
Sbjct: 528 RRRRRSPTYSPPFRRPRSHRSRSPLRY 554
>At3g11680.1 68416.m01432 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 488
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +3
Query: 45 IREEYPDRIMNTYSVVPSPKVSDTVVEPYNAVLSIHQLVE 164
++ YP+ + ++P ++ ++E N V I++ VE
Sbjct: 371 LKSSYPETYKDLLEIIPGVTMASILIEVVNCVEKIYEAVE 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,345,541
Number of Sequences: 28952
Number of extensions: 196799
Number of successful extensions: 648
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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