Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20542
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    29   0.21 
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    26   2.0  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   2.6  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   3.5  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   3.5  
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    25   4.6  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   6.1  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   8.0  

>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 29.5 bits (63), Expect = 0.21
 Identities = 22/105 (20%), Positives = 53/105 (50%)
 Frame = +3

Query: 69  KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 248
           K P +E  P   V  L+ +   I    +I +++ +  ++  +V++ P + ++ +I+ +  
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435

Query: 249 SD*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 383
           +    +   +KM K+  L      P PR++ +T+H+I +  ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 296 RPLVDLRNPGPPQHQEHETQNPEHHEDAE 382
           +P  D RN GP Q  + + + PE H +++
Sbjct: 151 KPSGDFRNEGPKQCDDSKIEKPELHVNSK 179


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = +3

Query: 99  NVVDNLSSEQE--------LIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEI 233
           NVVD+LS EQE        L DQ N   +  NSLR+       +P  + V++I
Sbjct: 137 NVVDDLSKEQESRKESAPQLYDQINAFIEKVNSLRSG-----SVPFTITVDDI 184


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 51  APSIPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDN 170
           +P +P K+P+  +  +  V+N  S ++L+   +TI+  D+
Sbjct: 246 SPEVP-KLPDNRELTVKQVENYDSWEDLVSSIDTIERKDD 284


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +3

Query: 117 SSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD 254
           S+ +EL+D+    KD+    +A K EV+D+ VK   E+++   KS+
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKSN 509


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 17/74 (22%), Positives = 36/74 (48%)
 Frame = +3

Query: 60  IPDKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKP 239
           + D++ + + +    +D +  E+E    A TIKD   SL +N   ++    +   E+++ 
Sbjct: 48  VQDELKQLQLRQKKAIDAIQ-EEEWKSNAKTIKDSQGSLDSN---LLSAEFRSFQEKLEK 103

Query: 240 SLKSD*KTLKCRMK 281
               + K LK ++K
Sbjct: 104 QSSINDKELKIKLK 117


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 326 PPQHQEHETQNPEHHEDAEKN 388
           PP H ++ TQ    HEDA+ +
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSS 629


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
 Frame = +3

Query: 63  PDKVPEAEDKPLNVVDNLSSEQELIDQANTIKD----IDN----SLRANKKEVIDIPVKV 218
           PD    A  + L++ DN+SS        NTI +    ID+    +L  N +++  + + +
Sbjct: 434 PDSYLAAPKERLSISDNMSSSSSQTATVNTISNYLNVIDSVREIALTVNDEKIYGLAISL 493

Query: 219 IVEEIKPSLKS 251
           ++++      S
Sbjct: 494 LIQKFSRKFDS 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,394
Number of Sequences: 5004
Number of extensions: 21988
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)