Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20542
(410 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 32 0.21
02_01_0267 - 1766071-1766261,1766368-1766569,1766719-1766814,176... 30 0.63
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 30 0.83
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316... 29 1.1
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 29 1.9
01_01_0100 - 755894-756662,757086-757598,758718-761050 29 1.9
09_04_0086 + 14445665-14446683,14448669-14448915 28 2.5
09_04_0085 + 14441123-14443507,14443731-14443787 28 2.5
08_02_0003 + 11180421-11180757,11180773-11185715 28 2.5
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 28 2.5
07_01_0376 + 2815419-2815755,2815912-2817659 28 2.5
08_02_0860 + 21970888-21971833,21973400-21974127 27 5.8
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 27 5.8
07_03_1325 + 25830838-25831440 27 7.7
06_01_0223 - 1709897-1709912,1710188-1712520 27 7.7
04_01_0327 + 4325225-4327486 27 7.7
01_04_0107 + 16086724-16086799,16088007-16088288,16088523-160885... 27 7.7
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.9 bits (69), Expect = 0.21
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 296 RPLVDLRNPGPPQHQEHETQNPEHHEDAEKNRFFRQK 406
RPL L +P PP Q ET+ E +++E+ + +Q+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEEKQQQQQE 134
>02_01_0267 -
1766071-1766261,1766368-1766569,1766719-1766814,
1767414-1767560,1767635-1767800,1767907-1767973,
1772850-1772949,1773029-1773099,1773199-1773382,
1773784-1773929,1774484-1774663,1774737-1774824,
1775634-1775838,1775945-1776081,1776529-1776612,
1776718-1776894,1777050-1777194,1777642-1777763,
1777846-1778091,1778571-1778789,1779016-1779094,
1779178-1779257,1779291-1779320
Length = 1053
Score = 30.3 bits (65), Expect = 0.63
Identities = 23/93 (24%), Positives = 46/93 (49%)
Frame = +3
Query: 72 VPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKS 251
+ A+ K L++ + S EQEL +++ D+ L+AN + + +K +EE+K +
Sbjct: 673 ISSADSKTLSL-EAESKEQELNSSKSSLDDLTAMLKANVDAINNFTIK--IEELKRQ-RD 728
Query: 252 D*KTLKCRMKMRKSRGL*SI*EIPGPRSIKSTK 350
+ KTL+ + G + ++ RS+ K
Sbjct: 729 NLKTLEANLDQTVRDGAKDLEQLMSSRSMHLAK 761
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.9 bits (64), Expect = 0.83
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 90 KPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD*KTLK 269
+P +V + S ++E N + L+ + P K IV++ SLK D K +K
Sbjct: 285 RPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMK 344
Query: 270 CRMKMRKS 293
+MK +K+
Sbjct: 345 MKMKTKKT 352
>12_02_0772 -
23029703-23029715,23029835-23030463,23030637-23031673,
23031830-23032166
Length = 671
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D + E ID+ I ++D L +K+ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQKDTL 53
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>09_04_0086 + 14445665-14446683,14448669-14448915
Length = 421
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 351 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 394
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>07_01_0376 + 2815419-2815755,2815912-2817659
Length = 694
Score = 28.3 bits (60), Expect = 2.5
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_02_0860 + 21970888-21971833,21973400-21974127
Length = 557
Score = 27.1 bits (57), Expect = 5.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 172 LLSMSLMVLAWSMSSCSLDKLSTTFKGLSSAS--GTLSGMEGARAASTNIVSNRAAC 8
LL +S L+WSMS+ S T G +++S GT R+ +SN+ C
Sbjct: 99 LLDLSSDELSWSMSTTSSSSYQPTNAGAATSSHVGTGDARSDLRSWLGGALSNQDTC 155
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = +2
Query: 314 RNPGPPQHQEHETQ-----NPEHHEDAEK 385
R P P QHQ+H+ Q +P HH+ ++
Sbjct: 24 RGPPPSQHQQHQHQHQQPPHPHHHQYVQR 52
>07_03_1325 + 25830838-25831440
Length = 200
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 51 APSIPDKVPEAEDKPLNVVDNLSSEQE 131
A +I K PE K N+V++LS E+E
Sbjct: 161 ADTIKGKTPEEIRKEFNIVNDLSKEEE 187
>06_01_0223 - 1709897-1709912,1710188-1712520
Length = 782
Score = 26.6 bits (56), Expect = 7.7
Identities = 9/44 (20%), Positives = 23/44 (52%)
Frame = +3
Query: 69 KVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVI 200
++ +DK L+ +D + + ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNKDIDELEDIAEVDKQLERYQRDTL 53
>04_01_0327 + 4325225-4327486
Length = 753
Score = 26.6 bits (56), Expect = 7.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 120 SEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSD*KTLKCRMKMRKSRG 299
S + +I + N K + + KE+ D KV+ +E +L D L+ + +RK RG
Sbjct: 423 SNETMIPE-NVKKLVSELVSRQLKELRDYVKKVVAQEGADALSQDVNLLEMAVYLRKKRG 481
>01_04_0107 +
16086724-16086799,16088007-16088288,16088523-16088585,
16088684-16089045
Length = 260
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +3
Query: 57 SIPDKVPEAEDKPLNVVDNLSS----EQELIDQANT-IKDIDNSLRANKKEVIDIPVKVI 221
S+ + +P++ KP+ V +SS E L D A+ +K+ D+ + D+P + +
Sbjct: 176 SLAELIPDS--KPIEEVLAISSFEFPESLLKDDASAFVKEEDDPREVIELPKTDLPSQPL 233
Query: 222 VEEIKPSL 245
VE KPSL
Sbjct: 234 VEPFKPSL 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,216,044
Number of Sequences: 37544
Number of extensions: 157171
Number of successful extensions: 668
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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