Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20542
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            32   0.16 
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)             28   2.6  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  27   4.5  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   4.5  
SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)                27   6.0  
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  27   7.9  
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 32.3 bits (70), Expect = 0.16
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
 Frame = +3

Query: 147 NTIKDIDNS--LRANKKEVIDIPVKVIVEEIKPSLKSD*KTLKCRMKMRKSRGL*SI*EI 320
           N +K + +S  +++ K  + D+PV   +EE       D   ++   K    RGL ++  +
Sbjct: 315 NFMKQMKHSQEVKSRKDTLCDLPVSSSMEEKIAKSGMDFNKMRSVYKEGGERGLLTVLAL 374

Query: 321 PGPRS---IKSTKHRILNTTKMLKKIVS 395
           P   S   +K +K R+  T +++ KIVS
Sbjct: 375 PPQYSQLNVKGSKPRVTKTIRIINKIVS 402


>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
          Length = 149

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 57  SIPDKVPEAEDKPLNVVDNLSSEQELIDQ-ANTIKDIDNSLRANKKEVIDIPVKVIVEEI 233
           SIP   P+ + K LN V+N++  +E  ++ A+ + D+ N + + K E     V   V+ +
Sbjct: 74  SIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVKSL 132

Query: 234 K 236
           K
Sbjct: 133 K 133


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 314 RNPGPPQHQEHETQNPEHHEDAEKNRFFRQK 406
           +N  P QHQ+ + Q+  HH   +K++  +Q+
Sbjct: 884 KNDNPHQHQQQKQQHGYHHRHQQKHQQKQQQ 914


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +3

Query: 66  DKVPEAEDKPLNVVDNLSSEQELIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL 245
           +KV E+ D  +  ++N     EL +Q   IK+ +  L+  +KE+  +  K+I  E+   L
Sbjct: 603 EKVNESRDDEITELEN-----ELEEQREIIKENEEKLKEKEKEIEKLKKKII--ELSDKL 655

Query: 246 K 248
           K
Sbjct: 656 K 656


>SB_39444| Best HMM Match : SAC3_GANP (HMM E-Value=0.68)
          Length = 794

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 326 PPQHQEHETQNPEHHEDAEKNRFFRQKW 409
           P    E E   PEHH+  +K++ F +K+
Sbjct: 560 PESTDEDEESEPEHHKKKDKDKKFGRKF 587


>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 102 VVDNLSSEQELIDQANTIKDIDNSLRANKKEVID 203
           V + + S++E+ D  N +KD+ +S+   KK+  D
Sbjct: 302 VKEAMPSKKEIPDMRNNLKDLKSSINEVKKQTDD 335


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 202 SMTSFLFARRLLSMSLMVLAWSM--SSCSLDKLSTTFKGLSSASGTLSGMEGARAASTNI 29
           S T  L  R LLS+  M   W M  SSC L  + T+   + +   TL  +     +   +
Sbjct: 433 SQTRMLSQRSLLSLHFMKCYWEMYKSSCGLWTIVTSSVTVLTHKPTLMNVNYVEQSLYEL 492

Query: 28  VSN 20
           +SN
Sbjct: 493 MSN 495


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,372,682
Number of Sequences: 59808
Number of extensions: 175439
Number of successful extensions: 674
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)